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Beisi Xu

Associate Research Scientist - St. Jude Children's Research Hospital

Position - Company  
Postdoctoral Fellow - City of Hope

Nucleosome Position/Methylation/Epigenomics/ChIP-Seq/RNA-Seq/Methyl-Seq/MNaseq-Seq/De novo Docking/Transcription Factor Binding Site Prediction@Dustin E. Schones@Department of Cancer Biology@Beckman Research Institute@City of Hope

http://www.cityofhope.org/directory/people/schones-dustin/Pages/default.aspx

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Apr 2011 - Mar 2014
Postdoctoral Fellow - Dalian Institute of Chemical Physics (DICP)

Denovo Docking@Guohui Li@1106@DICP
http://www.combio.dicp.ac.cn/LI%20Guohui.html

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Aug 2009 - Apr 2011
Postdoctoral Fellow - University of Tennesse Health Science Center

Transcription Factor Binding site Prediction. http://compbio.uthsc.edu/

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Sep 2009 - Dec 2009
Internship - Beijing Genomics Institute, Shenzhen

Perl Programming for Panda Genomic Annotation.

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Mar 2009 - May 2009
Research Fellow - Indiana University - Purdue University Indianapolis

Yaoqi Zhou's group at CCBB in IUPUI

http://sparks.informatics.iupui.edu/

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Sep 2007 - Oct 2008
Research Assistant - University of Science and Technology of China

PSE http://polymer.ustc.edu.cn/english/index.htm

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Sep 2003 - Aug 2007
Student - University of Science and Technology of China

I love USTC

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Sep 1999 - Jul 2005
Associate Research Scientist - St. Jude Children's Research Hospital Apr 2014 - Present
Degree - University  
Ph. D, Bioinformatics - University of Science and Technology of China 1999 - 2009
Research Fellowship, Bioinformatics - Indiana University - Purdue University Indianapolis 2007 - 2008
Doctor of Philosophy (Ph.D.), Biomathematics, Bioinformatics, and Computational Biology - University of Science and Technology of China 2003 - 2008
BS, Polymer - University of Science and Technology of China 1999 - 2003
Bachelor's degree, Polymer - University of Science and Technology of China 1999 - 2003
Publication Info
Peripheral insertion modulates the editing activity of the isolated CP1 domain of leucyl-tRNA synthetase. Liu RJ, Tan M, Du DH, Xu BS, Eriani G, Wang ED Biochem J. 440(2):217-27. doi: 10.1042/BJ20111177. December 1, 2011. View on PubMed.
Fast and accurate computation schemes for evaluating vibrational entropy of proteins. Xu B, Shen H, Zhu X, Li G J Comput Chem. 32(15):3188-93. doi: 10.1002/jcc.21900. November 30, 2011. View on PubMed.
Insight into mechanism of small molecule inhibitors of the MDM2-p53 interaction: molecular dynamics simulation and free energy analysis. Chen J, Wang J, Xu B, Zhu W, Li G J Mol Graph Model. 30:46-53. doi: 10.1016/j.jmgm.2011.06.003. June 13, 2011. View on PubMed.
An all-atom knowledge-based energy function for protein-DNA threading, docking decoy discrimination, and prediction of transcription-factor binding profiles. Xu B, Yang Y, Liang H, Zhou Y Proteins. 76(3):718-30. doi: 10.1002/prot.22384. August 15, 2009. View on PubMed.
Thermodynamic behaviors of polyampholytes at low temperatures. Xu B, Huang L, Liang H J Chem Phys. 121(15):7494-500. doi: 10.1063/1.1792191. October 15, 2004. View on PubMed.
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