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Savithramma Dinesh Kumar

Position - Company  
Professor - University of California, Davis Feb 2010 - Present
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Publication Info
Arabidopsis Microtubule-Associated Protein MAP65-3 Cross-Links Antiparallel Microtubules toward Their Plus Ends in the Phragmoplast via Its Distinct C-Terminal Microtubule Binding Domain. Ho CM, Lee YR, Kiyama LD, Dinesh-Kumar SP, Liu B Plant Cell. :. doi: 10.1105/tpc.111.092569. May 8, 2012. View on PubMed.
Arabidopsis RTNLB1 and RTNLB2 Reticulon-like proteins regulate intracellular trafficking and activity of the FLS2 immune receptor. Lee HY, Bowen CH, Popescu GV, Kang HG, Kato N, Ma S, Dinesh-Kumar S, Snyder M, Popescu SC Plant Cell. 23(9):3374-91. doi: 10.1105/tpc.111.089656. September 23, 2011. View on PubMed.
What can plant autophagy do for an innate immune response? Hayward AP, Dinesh-Kumar SP Annu Rev Phytopathol. 49:557-76. doi: 10.1146/annurev-phyto-072910-095333. 2011. View on PubMed.
Studying NB-LRR immune receptor localization by agroinfiltration transient expression. Cournoyer P, Dinesh-Kumar SP Methods Mol Biol. 712:1-8. doi: 10.1007/978-1-61737-998-7_1. 2011. View on PubMed.
Virus-induced gene silencing in nicotiana benthamiana and other plant species. Hayward A, Padmanabhan M, Dinesh-Kumar SP Methods Mol Biol. 678:55-63. doi: 10.1007/978-1-60761-682-5_5. 2011. View on PubMed.
All hands on deck—the role of chloroplasts, endoplasmic reticulum, and the nucleus in driving plant innate immunity. Padmanabhan MS, Dinesh-Kumar SP Mol Plant Microbe Interact. 23(11):1368-80. doi: 10.1094/MPMI-05-10-0113. November 2010. View on PubMed.
SGT1 positively regulates the process of plant cell death during both compatible and incompatible plant-pathogen interactions. Wang K, Uppalapati SR, Zhu X, Dinesh-Kumar SP, Mysore KS Mol Plant Pathol. 11(5):597-611. doi: 10.1111/j.1364-3703.2010.00631.x. September 2010. View on PubMed.
Virus-induced gene silencing offers a functional genomics platform for studying plant cell wall formation. Zhu X, Pattathil S, Mazumder K, Brehm A, Hahn MG, Dinesh-Kumar SP, Joshi CP Mol Plant. 3(5):818-33. doi: 10.1093/mp/ssq023. June 3, 2010. View on PubMed.
Special delivery for MHC II via autophagy. Hayward AP, Dinesh-Kumar SP Immunity. 32(5):587-90. doi: 10.1016/j.immuni.2010.04.015. May 28, 2010. View on PubMed.
Function of endoplasmic reticulum calcium ATPase in innate immunity-mediated programmed cell death. Zhu X, Caplan J, Mamillapalli P, Czymmek K, Dinesh-Kumar SP EMBO J. 29(5):1007-18. doi: 10.1038/emboj.2009.402. March 3, 2010. View on PubMed.
Induced ER chaperones regulate a receptor-like kinase to mediate antiviral innate immune response in plants. Caplan JL, Zhu X, Mamillapalli P, Marathe R, Anandalakshmi R, Dinesh-Kumar SP Cell Host Microbe. 6(5):457-69. doi: 10.1016/j.chom.2009.10.005. November 19, 2009. View on PubMed.
Integrated analysis of co-expressed MAP kinase substrates in Arabidopsis thaliana. Popescu SC, Popescu GV, Snyder M, Dinesh-Kumar SP Plant Signal Behav. 4(6):524-7. June 25, 2009. View on PubMed.
Autophagy and plant innate immunity: Defense through degradation. Hayward AP, Tsao J, Dinesh-Kumar SP Semin Cell Dev Biol. 20(9):1041-7. doi: 10.1016/j.semcdb.2009.04.012. May 3, 2009. View on PubMed.
Virus-induced gene silencing as a tool for delivery of dsRNA into plants. Padmanabhan M, Dinesh-Kumar SP Cold Spring Harb Protoc. 2009(2):pdb.prot5139. doi: 10.1101/pdb.prot5139. February 2009. View on PubMed.
Something old, something new: plant innate immunity and autophagy. Seay M, Hayward AP, Tsao J, Dinesh-Kumar SP Curr Top Microbiol Immunol. 335:287-306. doi: 10.1007/978-3-642-00302-8_14. 2009. View on PubMed.
MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, Popescu GV, Bachan S, Zhang Z, Gerstein M, Snyder M, Dinesh-Kumar SP Genes Dev. 23(1):80-92. doi: 10.1101/gad.1740009. January 1, 2009. View on PubMed.
The leucine-rich repeat domain in plant innate immunity: a wealth of possibilities. Padmanabhan M, Cournoyer P, Dinesh-Kumar SP Cell Microbiol. 11(2):191-8. doi: 10.1111/j.1462-5822.2008.01260.x. November 3, 2008. View on PubMed.
Plant NB-LRR immune receptors: from recognition to transcriptional reprogramming. Caplan J, Padmanabhan M, Dinesh-Kumar SP Cell Host Microbe. 3(3):126-35. doi: 10.1016/j.chom.2008.02.010. March 13, 2008. View on PubMed.
Chloroplastic protein NRIP1 mediates innate immune receptor recognition of a viral effector. Caplan JL, Mamillapalli P, Burch-Smith TM, Czymmek K, Dinesh-Kumar SP Cell. 132(3):449-62. doi: 10.1016/j.cell.2007.12.031. February 8, 2008. View on PubMed.
Virus-induced gene silencing as a tool to identify host genes affecting viral pathogenicity. Zhu X, Dinesh-Kumar SP Methods Mol Biol. 451:641-8. doi: 10.1007/978-1-59745-102-4_43. 2008. View on PubMed.
Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes. Klionsky DJ, Abeliovich H, Agostinis P, Agrawal DK, Aliev G, Askew DS, Baba M and 229 others Autophagy. 4(2):151-75. November 21, 2007. View on PubMed.
The development of protein microarrays and their applications in DNA-protein and protein-protein interaction analyses of Arabidopsis transcription factors. Gong W, He K, Covington M, Dinesh-Kumar SP, Snyder M, Harmer SL, Zhu YX, Deng XW Mol Plant. 1(1):27-41. doi: 10.1093/mp/ssm009. October 23, 2007. View on PubMed.
A ligation-independent cloning tobacco rattle virus vector for high-throughput virus-induced gene silencing identifies roles for NbMADS4-1 and -2 in floral development. Dong Y, Burch-Smith TM, Liu Y, Mamillapalli P, Dinesh-Kumar SP Plant Physiol. 145(4):1161-70. doi: 10.1104/pp.107.107391. October 11, 2007. View on PubMed.
Arabidopsis ATG6 is required to limit the pathogen-associated cell death response. Patel S, Dinesh-Kumar SP Autophagy. 4(1):20-7. September 11, 2007. View on PubMed.
Arabidopsis protein microarrays for the high-throughput identification of protein-protein interactions. Popescu SC, Snyder M, Dinesh-Kumar S Plant Signal Behav. 2(5):416-20. September 2007. View on PubMed.
The functions of plant TIR domains. Burch-Smith TM, Dinesh-Kumar SP Sci STKE. 2007(401):pe46. doi: 10.1126/stke.4012007pe46. August 28, 2007. View on PubMed.
Autophagy takes its TOLL on innate immunity. Seay MD, Dinesh-Kumar SP Cell Host Microbe. 2(2):69-70. doi: 10.1016/j.chom.2007.07.008. August 16, 2007. View on PubMed.
Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Popescu SC, Popescu GV, Bachan S, Zhang Z, Seay M, Gerstein M, Snyder M, Dinesh-Kumar SP Proc Natl Acad Sci U S A. 104(11):4730-5. doi: 10.1073/pnas.0611615104. March 13, 2007. View on PubMed.
The MI-1-mediated pest resistance requires Hsp90 and Sgt1. Bhattarai KK, Li Q, Liu Y, Dinesh-Kumar SP, Kaloshian I Plant Physiol. 144(1):312-23. doi: 10.1104/pp.107.097246. March 9, 2007. View on PubMed.
A novel role for the TIR domain in association with pathogen-derived elicitors. Burch-Smith TM, Schiff M, Caplan JL, Tsao J, Czymmek K, Dinesh-Kumar SP PLoS Biol. 5(3):e68. doi: 10.1371/journal.pbio.0050068. March 2007. View on PubMed.
Efficient virus-induced gene silencing in Arabidopsis. Burch-Smith TM, Schiff M, Liu Y, Dinesh-Kumar SP Plant Physiol. 142(1):21-7. doi: 10.1104/pp.106.084624. June 30, 2006. View on PubMed.
Using viral vectors to silence endogenous genes. Caplan J, Dinesh-Kumar SP Curr Protoc Microbiol. Chapter 16:Unit 16I.6. doi: 10.1002/9780471729259.mc16i06s01. June 2006. View on PubMed.
Autophagy and plant innate immunity. Seay M, Patel S, Dinesh-Kumar SP Cell Microbiol. 8(6):899-906. doi: 10.1111/j.1462-5822.2006.00715.x. June 2006. View on PubMed.
Autophagy in the control of programmed cell death. Patel S, Caplan J, Dinesh-Kumar SP Curr Opin Plant Biol. 9(4):391-6. doi: 10.1016/j.pbi.2006.05.007. May 19, 2006. View on PubMed.
Life after death: are autophagy genes involved in cell death and survival during plant innate immune responses? Seay MD, Dinesh-Kumar SP Autophagy. 1(3):185-6. October 3, 2005. View on PubMed.
Mechanisms of plant resistance to viruses. Soosaar JL, Burch-Smith TM, Dinesh-Kumar SP Nat Rev Microbiol. 3(10):789-98. doi: 10.1038/nrmicro1239. October 2005. View on PubMed.
Autophagy regulates programmed cell death during the plant innate immune response. Liu Y, Schiff M, Czymmek K, Tallóczy Z, Levine B, Dinesh-Kumar SP Cell. 121(4):567-77. doi: 10.1016/j.cell.2005.03.007. May 20, 2005. View on PubMed.
An alternative tandem affinity purification strategy applied to Arabidopsis protein complex isolation. Rubio V, Shen Y, Saijo Y, Liu Y, Gusmaroli G, Dinesh-Kumar SP, Deng XW Plant J. 41(5):767-78. doi: 10.1111/j.1365-313X.2004.02328.x. March 2005. View on PubMed.
Applications and advantages of virus-induced gene silencing for gene function studies in plants. Burch-Smith TM, Anderson JC, Martin GB, Dinesh-Kumar SP Plant J. 39(5):734-46. doi: 10.1111/j.1365-313X.2004.02158.x. September 2004. View on PubMed.
Study of Arabidopsis thaliana resistome in response to cucumber mosaic virus infection using whole genome microarray. Marathe R, Guan Z, Anandalakshmi R, Zhao H, Dinesh-Kumar SP Plant Mol Biol. 55(4):501-20. doi: 10.1007/s11103-004-0439-0. July 2004. View on PubMed.
Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes. Gong W, Shen YP, Ma LG, Pan Y, Du YL, Wang DH, Yang JY and 25 others Plant Physiol. 135(2):773-82. doi: 10.1104/pp.104.042176. June 2004. View on PubMed.
Involvement of MEK1 MAPKK, NTF6 MAPK, WRKY/MYB transcription factors, COI1 and CTR1 in N-mediated resistance to tobacco mosaic virus. Liu Y, Schiff M, Dinesh-Kumar SP Plant J. 38(5):800-9. doi: 10.1111/j.1365-313X.2004.02085.x. June 2004. View on PubMed.
Virus induced gene silencing of a DEFICIENS ortholog in Nicotiana benthamiana. Liu Y, Nakayama N, Schiff M, Litt A, Irish VF, Dinesh-Kumar SP Plant Mol Biol. 54(5):701-11. doi: 10.1023/B:PLAN.0000040899.53378.83. March 2004. View on PubMed.
Molecular chaperone Hsp90 associates with resistance protein N and its signaling proteins SGT1 and Rar1 to modulate an innate immune response in plants. Liu Y, Burch-Smith T, Schiff M, Feng S, Dinesh-Kumar SP J Biol Chem. 279(3):2101-8. doi: 10.1074/jbc.M310029200. January 16, 2004. View on PubMed.
Two MAPK cascades, NPR1, and TGA transcription factors play a role in Pto-mediated disease resistance in tomato. Ekengren SK, Liu Y, Schiff M, Dinesh-Kumar SP, Martin GB Plant J. 36(6):905-17. December 2003. View on PubMed.
P58(IPK), a plant ortholog of double-stranded RNA-dependent protein kinase PKR inhibitor, functions in viral pathogenesis. Bilgin DD, Liu Y, Schiff M, Dinesh-Kumar SP Dev Cell. 4(5):651-61. May 2003. View on PubMed.
The COP9 signalosome interacts physically with SCF COI1 and modulates jasmonate responses. Feng S, Ma L, Wang X, Xie D, Dinesh-Kumar SP, Wei N, Deng XW Plant Cell. 15(5):1083-94. May 2003. View on PubMed.
Plant defense: one post, multiple guards?! Marathe R, Dinesh-Kumar SP Mol Cell. 11(2):284-6. February 2003. View on PubMed.
Virus-induced gene silencing. Dinesh-Kumar SP, Anandalakshmi R, Marathe R, Schiff M, Liu Y Methods Mol Biol. 236:287-94. doi: 10.1385/1-59259-413-1:287. 2003. View on PubMed.
RCY1, an Arabidopsis thaliana RPP8/HRT family resistance gene, conferring resistance to cucumber mosaic virus requires salicylic acid, ethylene and a novel signal transduction mechanism. Takahashi H, Miller J, Nozaki Y, Takeda M, Shah J, Hase S, Ikegami M, Ehara Y, Dinesh-Kumar SP, Sukamto Plant J. 32(5):655-67. December 2002. View on PubMed.
Virus-induced gene silencing in tomato. Liu Y, Schiff M, Dinesh-Kumar SP Plant J. 31(6):777-86. September 2002. View on PubMed.
Role of SCF ubiquitin-ligase and the COP9 signalosome in the N gene-mediated resistance response to Tobacco mosaic virus. Liu Y, Schiff M, Serino G, Deng XW, Dinesh-Kumar SP Plant Cell. 14(7):1483-96. July 2002. View on PubMed.
Tobacco Rar1, EDS1 and NPR1/NIM1 like genes are required for N-mediated resistance to tobacco mosaic virus. Liu Y, Schiff M, Marathe R, Dinesh-Kumar SP Plant J. 30(4):415-29. May 2002. View on PubMed.
The tobacco mosaic virus resistance gene, N. Marathe R, Anandalakshmi R, Liu Y, Dinesh-Kumar SP Mol Plant Pathol. 3(3):167-72. doi: 10.1046/j.1364-3703.2002.00110.x. May 1, 2002. View on PubMed.
A sequence required for -1 ribosomal frameshifting located four kilobases downstream of the frameshift site. Paul CP, Barry JK, Dinesh-Kumar SP, Brault V, Miller WA J Mol Biol. 310(5):987-99. doi: 10.1006/jmbi.2001.4801. July 27, 2001. View on PubMed.
Structure-function analysis of the tobacco mosaic virus resistance gene N. Dinesh-Kumar SP, Tham WH, Baker BJ Proc Natl Acad Sci U S A. 97(26):14789-94. doi: 10.1073/pnas.97.26.14789. December 19, 2000. View on PubMed.
Alternatively spliced N resistance gene transcripts: their possible role in tobacco mosaic virus resistance. Dinesh-Kumar SP, Baker BJ Proc Natl Acad Sci U S A. 97(4):1908-13. doi: 10.1073/pnas.020367497. February 15, 2000. View on PubMed.
Interactions between tobacco mosaic virus and the tobacco N gene. Erickson FL, Dinesh-Kumar SP, Holzberg S, Ustach CV, Dutton M, Handley V, Corr C, Baker BJ Philos Trans R Soc Lond B Biol Sci. 354(1383):653-8. doi: 10.1098/rstb.1999.0417. March 29, 1999. View on PubMed.
Extreme Reduction of Disease in Oats Transformed with the 5' Half of the Barley Yellow Dwarf Virus-PAV Genome. Koev G, Mohan BR, Dinesh-Kumar SP, Torbert KA, Somers DA, Miller WA Phytopathology. 88(10):1013-9. doi: 10.1094/PHYTO.1998.88.10.1013. October 1998. View on PubMed.
Signaling in plant-microbe interactions. Baker B, Zambryski P, Staskawicz B, Dinesh-Kumar SP Science. 276(5313):726-33. May 2, 1997. View on PubMed.
Local and distant sequences are required for efficient readthrough of the barley yellow dwarf virus PAV coat protein gene stop codon. Brown CM, Dinesh-Kumar SP, Miller WA J Virol. 70(9):5884-92. September 1996. View on PubMed.
Aphid transmission and systemic plant infection determinants of barley yellow dwarf luteovirus-PAV are contained in the coat protein readthrough domain and 17-kDa protein, respectively. Chay CA, Gunasinge UB, Dinesh-Kumar SP, Miller WA, Gray SM Virology. 219(1):57-65. doi: 10.1006/viro.1996.0222. May 1, 1996. View on PubMed.
Genes and cis-acting sequences involved in replication of barley yellow dwarf virus-PAV RNA. Mohan BR, Dinesh-Kumar SP, Miller WA Virology. 212(1):186-95. doi: 10.1006/viro.1995.1467. September 10, 1995. View on PubMed.
Permanent fixation of a transposable element insert in the A2 gene of maize (Zea mays L.). Thatiparthi VR, Dinesh-Kumar SP, Peterson PA J Hered. 86(3):167-71. June 1995. View on PubMed.
Transposon tagging of tobacco mosaic virus resistance gene N: its possible role in the TMV-N-mediated signal transduction pathway. Dinesh-Kumar SP, Whitham S, Choi D, Hehl R, Corr C, Baker B Proc Natl Acad Sci U S A. 92(10):4175-80. May 9, 1995. View on PubMed.
The product of the tobacco mosaic virus resistance gene N: similarity to toll and the interleukin-1 receptor. Whitham S, Dinesh-Kumar SP, Choi D, Hehl R, Corr C, Baker B Cell. 78(6):1101-15. September 23, 1994. View on PubMed.
Replication of barley yellow dwarf virus satellite RNA transcripts in oat protoplasts. Silver SL, Rasochova L, Dinesh-Kumar SP, Miller WA Virology. 198(1):331-5. doi: 10.1006/viro.1994.1036. January 1994. View on PubMed.
Translational frameshifting by barley yellow dwarf virus RNA (PAV serotype) in Escherichia coli and in eukaryotic cell-free extracts. Di R, Dinesh-Kumar SP, Miller WA Mol Plant Microbe Interact. 6(4):444-52. August 1993. View on PubMed.
Control of start codon choice on a plant viral RNA encoding overlapping genes. Dinesh-Kumar SP, Miller WA Plant Cell. 5(6):679-92. doi: 10.1105/tpc.5.6.679. June 1993. View on PubMed.
Precise mapping and in vitro translation of a trifunctional subgenomic RNA of barley yellow dwarf virus. Dinesh-Kumar SP, Brault V, Miller WA Virology. 187(2):711-22. April 1992. View on PubMed.
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