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Jeffrey Boore

CEO and Founder - Genome Project Solutions
Hercules California, US
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Position - Company  
Head of Evolutionary Genomics and member of Senior Management Team - DOE Joint Genome Institute (JGI)

JGI (http://www.jgi.doe.gov/) is one of the world's largest genome sequencing centers. Originally built to sequence a large portion of the human genome, JGI is now the world's leader in comparative genome sequencing and analysis. One of my largest roles there was to guide that transition and to build the large interface that now exists with the scientific community. (I remain a guest researcher at JGI.)

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Jul 2000 - Jan 2007
CEO and Founder - Genome Project Solutions

Genome Project Solutions operates without profit as an independent research organization. Our mission is to conduct leading-edge genomics research, to build custom bioinformatics tools, especially for addressing gene function and large-scale evolutionary patterns, and to inform and educate scientists and the public about genome science.

We routinely contribute to planning genomics projects, preparing proposals, and contracting for sequencing and other genomics services. We perform follow-on analyses, such as sequence assembly, gene annotation, gene functional assignment, SNP detection, biochemical pathway reconstruction, protein structure and localization analysis, whole genome evolutionary analysis, and gene colinearity mapping. Although we occasionally find collaborators with funds in hand, we often start projects by partnering with a team for a proposal without any charges with the expectation that our costs for informatic analysis will be part of the proposal budget.

Projects completed or underway include sequencing and multiple forms of analysis of whole prokaryotic and eukaryotic genomes, ESTs and full-length cDNAs, large insert clones, organelle genomes, viruses, random samples from the environment, and directed "finishing" for gap closure.

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Jan 2007 - Present
Adjunct (Full) Professor - Integrative Biology Department University of California, Berkeley

My appointment at Berkeley is as adjunct faculty but I have played a very active role by teaching every year, having grant funds through the university, sitting on numerous committees, and supervising graduate students in my lab.

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Sep 2001 - Present
Degree - University  
Ph.D., Biology (emphasizing genome evolution) - University of Michigan - Ann Arbor 1987 - 1992
B.S., Biology - Pennsylvania State University, State College 1976 - 1980
Publication Info
Evolutionary history of novel genes on the tammar wallaby Y chromosome: Implications for sex chromosome evolution. Murtagh VJ, O'Meally D, Sankovic N, Delbridge ML, Kuroki Y, Boore JL, Toyoda A and 6 others Genome Res. 22(3):498-507. doi: 10.1101/gr.120790.111. March 2012. View on PubMed.
Draft genome sequence and genetic transformation of the oleaginous alga Nannochloropis gaditana. Radakovits R, Jinkerson RE, Fuerstenberg SI, Tae H, Settlage RE, Boore JL, Posewitz MC Nat Commun. 3:686. doi: 10.1038/ncomms1688. February 21, 2012. View on PubMed.
The monarch butterfly genome yields insights into long-distance migration. Zhan S, Merlin C, Boore JL, Reppert SM Cell. 147(5):1171-85. doi: 10.1016/j.cell.2011.09.052. November 23, 2011. View on PubMed.
Divergence in cis-regulatory sequences surrounding the opsin gene arrays of African cichlid fishes. O'Quin KE, Smith D, Naseer Z, Schulte J, Engel SD, Loh YH, Streelman JT, Boore JL, Carleton KL BMC Evol Biol. 11:120. doi: 10.1186/1471-2148-11-120. May 9, 2011. View on PubMed.
Crawling through time: Transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics. Medina M, Lal S, Vallès Y, Takaoka TL, Dayrat BA, Boore JL, Gosliner T Mar Genomics. 4(1):51-9. doi: 10.1016/j.margen.2010.12.006. February 4, 2011. View on PubMed.
The ecoresponsive genome of Daphnia pulex. Colbourne JK, Pfrender ME, Gilbert D, Thomas WK, Tucker A, Oakley TH, Tokishita S and 62 others Science. 331(6017):555-61. doi: 10.1126/science.1197761. February 4, 2011. View on PubMed.
Signatures of adaptation to obligate biotrophy in the Hyaloperonospora arabidopsidis genome. Baxter L, Tripathy S, Ishaque N, Boot N, Cabral A, Kemen E, Thines M and 45 others Science. 330(6010):1549-51. doi: 10.1126/science.1195203. December 10, 2010. View on PubMed.
Complete plastome sequences of Equisetum arvense and Isoetes flaccida: implications for phylogeny and plastid genome evolution of early land plant lineages. Karol KG, Arumuganathan K, Boore JL, Duffy AM, Everett KD, Hall JD, Hansen SK and 6 others BMC Evol Biol. 10:321. doi: 10.1186/1471-2148-10-321. October 23, 2010. View on PubMed.
Extreme reconfiguration of plastid genomes in the angiosperm family Geraniaceae: rearrangements, repeats, and codon usage. Guisinger MM, Kuehl JV, Boore JL, Jansen RK Mol Biol Evol. 28(1):583-600. doi: 10.1093/molbev/msq229. August 30, 2010. View on PubMed.
Domestication of olive fly through a multi-regional host shift to cultivated olives: comparative dating using complete mitochondrial genomes. Nardi F, Carapelli A, Boore JL, Roderick GK, Dallai R, Frati F Mol Phylogenet Evol. 57(2):678-86. doi: 10.1016/j.ympev.2010.08.008. August 17, 2010. View on PubMed.
Analysis of the complete mitochondrial genome sequences of the soybean rust pathogens phakopsora pachyrhizi and p. meibomiae. Stone CL, Buitrago ML, Boore JL, Frederick RD Mycologia. 102(4):887-97. August 2010. View on PubMed.
Sessile snails, dynamic genomes: gene rearrangements within the mitochondrial genome of a family of caenogastropod molluscs. Rawlings TA, MacInnis MJ, Bieler R, Boore JL, Collins TM BMC Genomics. 11:440. doi: 10.1186/1471-2164-11-440. July 19, 2010. View on PubMed.
Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire. Lévesque CA, Brouwer H, Cano L, Hamilton JP, Holt C, Huitema E, Raffaele S and 41 others Genome Biol. 11(7):R73. doi: 10.1186/gb-2010-11-7-r73. July 13, 2010. View on PubMed.
Ecdysozoan mitogenomics: evidence for a common origin of the legged invertebrates, the Panarthropoda. Rota-Stabelli O, Kayal E, Gleeson D, Daub J, Boore JL, Telford MJ, Pisani D, Blaxter M, Lavrov DV Genome Biol Evol. 2:425-40. doi: 10.1093/gbe/evq030. July 12, 2010. View on PubMed.
Chloroplast genome sequence of the moss Tortula ruralis: gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes. Oliver MJ, Murdock AG, Mishler BD, Kuehl JV, Boore JL, Mandoli DF, Everett KD, Wolf PG, Duffy AM, Karol KG BMC Genomics. 11:143. doi: 10.1186/1471-2164-11-143. February 27, 2010. View on PubMed.
Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae. Guisinger MM, Chumley TW, Kuehl JV, Boore JL, Jansen RK J Mol Evol. :. doi: 10.1007/s00239-009-9317-3. January 21, 2010. View on PubMed.
High divergence across the whole mitochondrial genome in the "pan-Antarctic" springtail Friesea grisea: evidence for cryptic species? Torricelli G, Carapelli A, Convey P, Nardi F, Boore JL, Frati F Gene. 449(1-2):30-40. doi: 10.1016/j.gene.2009.09.006. January 1, 2010. View on PubMed.
Genomic analysis of a sexually-selected character: EST sequencing and microarray analysis of eye-antennal imaginal discs in the stalk-eyed fly Teleopsis dalmanni (Diopsidae). Baker RH, Morgan J, Wang X, Boore JL, Wilkinson GS BMC Genomics. 10:361. doi: 10.1186/1471-2164-10-361. August 5, 2009. View on PubMed.
Parallel loss of plastid introns and their maturase in the genus Cuscuta. McNeal JR, Kuehl JV, Boore JL, Leebens-Mack J, dePamphilis CW PLoS One. 4(6):e5982. doi: 10.1371/journal.pone.0005982. June 19, 2009. View on PubMed.
Arachnid relationships based on mitochondrial genomes: asymmetric nucleotide and amino acid bias affects phylogenetic analyses. Masta SE, Longhorn SJ, Boore JL Mol Phylogenet Evol. 50(1):117-28. doi: 10.1016/j.ympev.2008.10.010. January 2009. View on PubMed.
Extensive reorganization of the plastid genome of Trifolium subterraneum (Fabaceae) is associated with numerous repeated sequences and novel DNA insertions. Cai Z, Guisinger M, Kim HG, Ruck E, Blazier JC, McMurtry V, Kuehl JV, Boore J, Jansen RK J Mol Evol. 67(6):696-704. doi: 10.1007/s00239-008-9180-7. December 2008. View on PubMed.
Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions. Guisinger MM, Kuehl JV, Boore JL, Jansen RK Proc Natl Acad Sci U S A. 105(47):18424-9. doi: 10.1073/pnas.0806759105. November 25, 2008. View on PubMed.
Development of simple sequence repeat markers for the soybean rust fungus, Phakopsora pachyrhizi. Anderson SJ, Stone CL, Posada-Buitrago ML, Boore JL, Neelam BA, Stephens RM, Luster DG, Frederick RD, Pedley KF Mol Ecol Resour. 8(6):1310-2. doi: 10.1111/j.1755-0998.2008.02272.x. November 2008. View on PubMed.
The minimum information about a genome sequence (MIGS) specification. Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T and 65 others Nat Biotechnol. 26(5):541-7. doi: 10.1038/nbt1360. May 2008. View on PubMed.
The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates. McCoy SR, Kuehl JV, Boore JL, Raubeson LA BMC Evol Biol. 8:130. doi: 10.1186/1471-2148-8-130. May 1, 2008. View on PubMed.
Beyond linear sequence comparisons: the use of genome-level characters for phylogenetic reconstruction. Boore JL, Fuerstenberg SI Philos Trans R Soc Lond B Biol Sci. 363(1496):1445-51. doi: 10.1098/rstb.2007.2234. April 27, 2008. View on PubMed.
Extensive rearrangements in the chloroplast genome of Trachelium caeruleum are associated with repeats and tRNA genes. Haberle RC, Fourcade HM, Boore JL, Jansen RK J Mol Evol. 66(4):350-61. doi: 10.1007/s00239-008-9086-4. March 11, 2008. View on PubMed.
Genome size, cell size, and the evolution of enucleated erythrocytes in attenuate salamanders. Mueller RL, Gregory TR, Gregory SM, Hsieh A, Boore JL Zoology (Jena). 111(3):218-30. doi: 10.1016/j.zool.2007.07.010. March 6, 2008. View on PubMed.
Parallel evolution of truncated transfer RNA genes in arachnid mitochondrial genomes. Masta SE, Boore JL Mol Biol Evol. 25(5):949-59. doi: 10.1093/molbev/msn051. February 23, 2008. View on PubMed.
Functional gene losses occur with minimal size reduction in the plastid genome of the parasitic liverwort Aneura mirabilis. Wickett NJ, Zhang Y, Hansen SK, Roper JM, Kuehl JV, Plock SA, Wolf PG, DePamphilis CW, Boore JL, Goffinet B Mol Biol Evol. 25(2):393-401. doi: 10.1093/molbev/msm267. February 2008. View on PubMed.
Group II introns break new boundaries: presence in a bilaterian's genome. Vallès Y, Halanych KM, Boore JL PLoS One. 3(1):e1488. doi: 10.1371/journal.pone.0001488. January 23, 2008. View on PubMed.
The Physcomitrella genome reveals evolutionary insights into the conquest of land by plants. Rensing SA, Lang D, Zimmer AD, Terry A, Salamov A, Shapiro H, Nishiyama T and 63 others Science. 319(5859):64-9. doi: 10.1126/science.1150646. January 4, 2008. View on PubMed.
Systematics and plastid genome evolution of the cryptically photosynthetic parasitic plant genus Cuscuta (Convolvulaceae). McNeal JR, Arumugunathan K, Kuehl JV, Boore JL, Depamphilis CW BMC Biol. 5:55. doi: 10.1186/1741-7007-5-55. December 13, 2007. View on PubMed.
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns. Jansen RK, Cai Z, Raubeson LA, Daniell H, Depamphilis CW, Leebens-Mack J, Müller KF and 9 others Proc Natl Acad Sci U S A. 104(49):19369-74. doi: 10.1073/pnas.0709121104. December 4, 2007. View on PubMed.
Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta. McNeal JR, Kuehl JV, Boore JL, de Pamphilis CW BMC Plant Biol. 7:57. doi: 10.1186/1471-2229-7-57. October 24, 2007. View on PubMed.
Multiple origins and rapid evolution of duplicated mitochondrial genes in parthenogenetic geckos (Heteronotia binoei; Squamata, Gekkonidae). Fujita MK, Boore JL, Moritz C Mol Biol Evol. 24(12):2775-86. doi: 10.1093/molbev/msm212. October 5, 2007. View on PubMed.
Comparative phylogenomic analyses of teleost fish Hox gene clusters: lessons from the cichlid fish Astatotilapia burtoni. Hoegg S, Boore JL, Kuehl JV, Meyer A BMC Genomics. 8:317. doi: 10.1186/1471-2164-8-317. September 10, 2007. View on PubMed.
Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae). Hansen DR, Dastidar SG, Cai Z, Penaflor C, Kuehl JV, Boore JL, Jansen RK Mol Phylogenet Evol. 45(2):547-63. doi: 10.1016/j.ympev.2007.06.004. June 16, 2007. View on PubMed.
Comparative chloroplast genomics: analyses including new sequences from the angiosperms Nuphar advena and Ranunculus macranthus. Raubeson LA, Peery R, Chumley TW, Dziubek C, Fourcade HM, Boore JL, Jansen RK BMC Genomics. 8:174. doi: 10.1186/1471-2164-8-174. June 15, 2007. View on PubMed.
The complete sequence of the mitochondrial genome of Nautilus macromphalus (Mollusca: Cephalopoda). Boore JL BMC Genomics. 7:182. doi: 10.1186/1471-2164-7-182. July 19, 2006. View on PubMed.
The mitochondrial genome of the entomophagous endoparasite Xenos vesparum (Insecta: Strepsiptera). Carapelli A, Vannini L, Nardi F, Boore JL, Beani L, Dallai R, Frati F Gene. 376(2):248-59. doi: 10.1016/j.gene.2006.04.005. July 19, 2006. View on PubMed.
Using partial genomic fosmid libraries for sequencing complete organellar genomes. McNeal JR, Leebens-Mack JH, Arumuganathan K, Kuehl JV, Boore JL, DePamphilis CW Biotechniques. 41(1):69-73. July 2006. View on PubMed.
Lophotrochozoan mitochondrial genomes. Vallès Y, Boore JL Integr Comp Biol. 46(4):544-57. doi: 10.1093/icb/icj056. June 30, 2006. View on PubMed.
Naked corals: skeleton loss in Scleractinia. Medina M, Collins AG, Takaoka TL, Kuehl JV, Boore JL Proc Natl Acad Sci U S A. 103(24):9096-100. doi: 10.1073/pnas.0602444103. June 13, 2006. View on PubMed.
The use of genome-level characters for phylogenetic reconstruction. Boore JL Trends Ecol Evol. 21(8):439-46. doi: 10.1016/j.tree.2006.05.009. June 8, 2006. View on PubMed.
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database. Dehal PS, Boore JL BMC Bioinformatics. 7:201. doi: 10.1186/1471-2105-7-201. April 11, 2006. View on PubMed.
The complete mitochondrial genome of the enigmatic bigheaded turtle (Platysternon): description of unusual genomic features and the reconciliation of phylogenetic hypotheses based on mitochondrial and nuclear DNA. Parham JF, Feldman CR, Boore JL BMC Evol Biol. 6:11. doi: 10.1186/1471-2148-6-11. February 7, 2006. View on PubMed.
Rolling circle amplification of metazoan mitochondrial genomes. Simison WB, Lindberg DR, Boore JL Mol Phylogenet Evol. 39(2):562-7. doi: 10.1016/j.ympev.2005.11.006. December 15, 2005. View on PubMed.
The phylogeny of Mediterranean tortoises and their close relatives based on complete mitochondrial genome sequences from museum specimens. Parham JF, Macey JR, Papenfuss TJ, Feldman CR, Türkozan O, Polymeni R, Boore J Mol Phylogenet Evol. 38(1):50-64. doi: 10.1016/j.ympev.2005.07.015. September 16, 2005. View on PubMed.
Two rounds of whole genome duplication in the ancestral vertebrate. Dehal P, Boore JL PLoS Biol. 3(10):e314. doi: 10.1371/journal.pbio.0030314. September 6, 2005. View on PubMed.
The complete mitochondrial genome of a gecko and the phylogenetic position of the Middle Eastern Teratoscincus keyserlingii. Macey JR, Fong JJ, Kuehl JV, Shafiei S, Ananjeva NB, Papenfuss TJ, Boore JL Mol Phylogenet Evol. 36(1):188-93. doi: 10.1016/j.ympev.2005.03.025. July 2005. View on PubMed.
Molecular mechanisms of extensive mitochondrial gene rearrangement in plethodontid salamanders. Mueller RL, Boore JL Mol Biol Evol. 22(10):2104-12. doi: 10.1093/molbev/msi204. June 29, 2005. View on PubMed.
Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone. Leebens-Mack J, Raubeson LA, Cui L, Kuehl JV, Fourcade MH, Chumley TW, Boore JL, Jansen RK, depamphilis CW Mol Biol Evol. 22(10):1948-63. doi: 10.1093/molbev/msi191. June 8, 2005. View on PubMed.
The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae). Wolf PG, Karol KG, Mandoli DF, Kuehl J, Arumuganathan K, Ellis MW, Mishler BD, Kelch DG, Olmstead RG, Boore JL Gene. 350(2):117-28. doi: 10.1016/j.gene.2005.01.018. May 9, 2005. View on PubMed.
Methods for obtaining and analyzing whole chloroplast genome sequences. Jansen RK, Raubeson LA, Boore JL, dePamphilis CW, Chumley TW, Haberle RC, Wyman SK and 8 others Methods Enzymol. 395:348-84. doi: 10.1016/S0076-6879(05)95020-9. 2005. View on PubMed.
Sequencing and comparing whole mitochondrial genomes of animals. Boore JL, Macey JR, Medina M Methods Enzymol. 395:311-48. doi: 10.1016/S0076-6879(05)95019-2. 2005. View on PubMed.
Automatic annotation of organellar genomes with DOGMA. Wyman SK, Jansen RK, Boore JL Bioinformatics. 20(17):3252-5. doi: 10.1093/bioinformatics/bth352. November 22, 2004. View on PubMed.
Mitochondrial genome data support the basal position of Acoelomorpha and the polyphyly of the Platyhelminthes. Ruiz-Trillo I, Riutort M, Fourcade HM, Baguñà J, Boore JL Mol Phylogenet Evol. 33(2):321-32. doi: 10.1016/j.ympev.2004.06.002. November 2004. View on PubMed.
Phylogenetic relationships among amphisbaenian reptiles based on complete mitochondrial genomic sequences. Macey JR, Papenfuss TJ, Kuehl JV, Fourcade HM, Boore JL Mol Phylogenet Evol. 33(1):22-31. doi: 10.1016/j.ympev.2004.05.003. October 2004. View on PubMed.
Morphological homoplasy, life history evolution, and historical biogeography of plethodontid salamanders inferred from complete mitochondrial genomes. Mueller RL, Macey JR, Jaekel M, Wake DB, Boore JL Proc Natl Acad Sci U S A. 101(38):13820-5. doi: 10.1073/pnas.0405785101. September 21, 2004. View on PubMed.
Complete mitochondrial genome sequence of Urechis caupo, a representative of the phylum Echiura. Boore JL BMC Genomics. 5:67. doi: 10.1186/1471-2164-5-67. September 15, 2004. View on PubMed.
The mitochondrial genome of Paraspadella gotoi is highly reduced and reveals that chaetognaths are a sister group to protostomes. Helfenbein KG, Fourcade HM, Vanjani RG, Boore JL Proc Natl Acad Sci U S A. 101(29):10639-43. doi: 10.1073/pnas.0400941101. July 20, 2004. View on PubMed.
Genes without frontiers? Bensasson D, Boore JL, Nielsen KM Heredity. 92(6):483-9. doi: 10.1038/sj.hdy.6800451. June 2004. View on PubMed.
The complete mitochondrial genome sequence of the spider Habronattus oregonensis reveals rearranged and extremely truncated tRNAs. Masta SE, Boore JL Mol Biol Evol. 21(5):893-902. doi: 10.1093/molbev/msh096. March 10, 2004. View on PubMed.
Complete sequences of the highly rearranged molluscan mitochondrial genomes of the Scaphopod Graptacme eborea and the bivalve Mytilus edulis. Boore JL, Medina M, Rosenberg LA Mol Biol Evol. 21(8):1492-503. doi: 10.1093/molbev/msh090. March 10, 2004. View on PubMed.
Phylogenetic position of the Pentastomida and (pan)crustacean relationships. Lavrov DV, Brown WM, Boore JL Proc Biol Sci. 271(1538):537-44. doi: 10.1098/rspb.2003.2631. March 7, 2004. View on PubMed.
The mitochondrial genome of Phoronis architecta--comparisons demonstrate that phoronids are lophotrochozoan protostomes. Helfenbein KG, Boore JL Mol Biol Evol. 21(1):153-7. doi: 10.1093/molbev/msh011. October 31, 2003. View on PubMed.
Molecular evolution and recombination in gender-associated mitochondrial DNAs of the Manila clam Tapes philippinarum. Passamonti M, Boore JL, Scali V Genetics. 164(2):603-11. June 2003. View on PubMed.
Evolutionary conservation of regulatory elements in vertebrate Hox gene clusters. Santini S, Boore JL, Meyer A Genome Res. 13(6A):1111-22. doi: 10.1101/gr.700503. June 2003. View on PubMed.
Hexapod origins: monophyletic or paraphyletic? Nardi F, Spinsanti G, Boore JL, Carapelli A, Dallai R, Frati F Science. 299(5614):1887-9. doi: 10.1126/science.1078607. March 21, 2003. View on PubMed.
The draft genome of Ciona intestinalis: insights into chordate and vertebrate origins. Dehal P, Satou Y, Campbell RK, Chapman J, Degnan B, De Tomaso A, Davidson B and 80 others Science. 298(5601):2157-67. doi: 10.1126/science.1080049. December 13, 2002. View on PubMed.
Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: duplication and nonrandom loss. Lavrov DV, Boore JL, Brown WM Mol Biol Evol. 19(2):163-9. doi: 10.1093/oxfordjournals.molbev.a004068. February 2002. View on PubMed.
The mitochondrial genome of the Sipunculid Phascolopsis gouldii supports its association with Annelida rather than Mollusca. Boore JL, Staton JL Mol Biol Evol. 19(2):127-37. doi: 10.1093/oxfordjournals.molbev.a004065. February 2002. View on PubMed.
The complete mitochondrial genome of the articulate brachiopod Terebratalia transversa. Helfenbein KG, Brown WM, Boore JL Mol Biol Evol. 18(9):1734-44. doi: 10.1093/oxfordjournals.molbev.a003961. September 2001. View on PubMed.
Complete mitochondrial genome sequence of the polychaete annelid Platynereis dumerilii. Boore JL Mol Biol Evol. 18(7):1413-6. doi: 10.1093/oxfordjournals.molbev.a003925. July 2001. View on PubMed.
Complete sequence of the mitochondrial genome of the tapeworm Hymenolepis diminuta: gene arrangements indicate that Platyhelminths are Eutrochozoans. von Nickisch-Rosenegk M, Brown WM, Boore JL Mol Biol Evol. 18(5):721-30. doi: 10.1093/oxfordjournals.molbev.a003854. May 2001. View on PubMed.
A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus. Lavrov DV, Brown WM, Boore JL Proc Natl Acad Sci U S A. 97(25):13738-42. doi: 10.1073/pnas.250402997. December 5, 2000. View on PubMed.
The complete mitochondrial DNA sequence of the horseshoe crab Limulus polyphemus. Lavrov DV, Boore JL, Brown WM Mol Biol Evol. 17(5):813-24. doi: 10.1093/oxfordjournals.molbev.a026360. May 2000. View on PubMed.
Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa. Boore JL, Brown WM Mol Biol Evol. 17(1):87-106. doi: 10.1093/oxfordjournals.molbev.a026241. January 2000. View on PubMed.
Entamoeba histolytica: a derived, mitochondriate eukaryote? Boore JL, Fuerstenberg SI Trends Microbiol. 7(11):426-8. November 1999. View on PubMed.
Animal mitochondrial genomes. Boore JL Nucleic Acids Res. 27(8):1767-80. April 15, 1999. View on PubMed.
Complete sequence, gene arrangement, and genetic code of mitochondrial DNA of the cephalochordate Branchiostoma floridae (Amphioxus) Boore JL, Daehler LL, Brown WM Mol Biol Evol. 16(3):410-8. doi: 10.1093/oxfordjournals.molbev.a026122. March 1999. View on PubMed.
Big trees from little genomes: mitochondrial gene order as a phylogenetic tool. Boore JL, Brown WM Curr Opin Genet Dev. 8(6):668-74. December 1998. View on PubMed.
Gene translocation links insects and crustaceans. Boore JL, Lavrov DV, Brown WM Nature. 392(6677):667-8. doi: 10.1038/33577. April 16, 1998. View on PubMed.
Transmission of mitochondrial DNA--playing favorites? Boore JL Bioessays. 19(9):751-3. doi: 10.1002/bies.950190904. September 1997. View on PubMed.
Complete sequence of the mitochondrial DNA of the annelid worm Lumbricus terrestris. Boore JL, Brown WM Genetics. 141(1):305-19. September 1995. View on PubMed.
Deducing the pattern of arthropod phylogeny from mitochondrial DNA rearrangements. Boore JL, Collins TM, Stanton D, Daehler LL, Brown WM Nature. 376(6536):163-5. doi: 10.1038/376163a0. July 13, 1995. View on PubMed.
Relocation of mitochondria to the prospective dorsal marginal zone during Xenopus embryogenesis. Yost HJ, Phillips CR, Boore JL, Bertman J, Whalon B, Danilchik MV Dev Biol. 170(1):83-90. doi: 10.1006/dbio.1995.1197. July 1995. View on PubMed.
Complete DNA sequence of the mitochondrial genome of the black chiton, Katharina tunicata. Boore JL, Brown WM Genetics. 138(2):423-43. October 1994. View on PubMed.
A novel mitochondrial genome organization for the blue mussel, Mytilus edulis. Hoffmann RJ, Boore JL, Brown WM Genetics. 131(2):397-412. June 1992. View on PubMed.
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