NGS data analysis
Next generation sequencing data analysis
We found 20 labs offering this service with prices from $10.00 to $260.00 per hour.
Example applications: ChIP-seq, RNA-seq, RIP-seq, exome-seq, etc
Software for Next-Gen Sequencing Analysis: softGenetics NextGENe, Avadis NGS, in-house well-defined pipelines and open-source programs
Target design for enrichment and deep sequencing
Raw data processing to remove low quality reads, alignment to reference genome using SHRIMP2 or BWA, and differential expression analysis using CuffDiff2 or EdgeR. We also can provide de novo assembly construction.
Demultiplexed data will be provided to the investigator in fastq format. The data will be transferred to the investigator’s server or onto an external hard drive provided by the investigator. The Core will attempt to maintain a copy of the data; however, this depends on storage availability on the Core’s servers.
Clinical Microarray Core
- 6 Orders Completed
- 3 Endorsements
Turnaround time: 2-3 weeks
Deliverables:
- Fastq file
- if it is data analysis, file type will depend on researcher
Data analysis: We offer statistical and bioinformatic data analysis on primary data and downstream functional analyses.
We support data from our and other, outside, platforms; and can help with publication and database submission.
We also provide commercial software at affordable rates for general use on our workstations... Show more »
Data analysis: We offer statistical and bioinformatic data analysis on primary data and downstream functional analyses.
We support data from our and other, outside, platforms; and can help with publication and database submission.
We also provide commercial software at affordable rates for general use on our workstations or your own machine, either by subscription or by the hour.
These software packages include Partek®, Spotfire®, and Ingenuity® Pathway Analysis, and CLC bio® Genomic Workbench and Genomic Server.
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Bioinformatic analysis of NGS data.
Bioinformatics for Illumina NGS data analysis
Laboratory for Advanced Genome Analysis
- 2 Orders Completed
Understanding the hidden story within large amounts of high throughput data along with the ever-evolving genomic resources can be very daunting. The LAGA has a committed team of bioinformaticians with extensive experience in microarray and NGS technology, informatics and molecular biology - our goal is to apply the necessary tools... Show more »
Understanding the hidden story within large amounts of high throughput data along with the ever-evolving genomic resources can be very daunting. The LAGA has a committed team of bioinformaticians with extensive experience in microarray and NGS technology, informatics and molecular biology - our goal is to apply the necessary tools to understand the underlying biological message.
LAGA offers acquisition, processing, statistical analysis, integration, and visualization of high-density genomic and transcriptome information from simple to complex experimental designs using one of several platforms. LAGA offers services on primary data and downstream functional analyses
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Data analysis for Next-generation Sequencing (NGS) applications including RNA-seq and whole genome shotgun sequencing