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QFAB Bioinformatics

St Lucia, Queensland, AU

QFAB provides bioinformatics services for life science researchers to analyse and manage large-scale genomics, proteomics, metabolomics and clinical datasets.

We offer a range of professional services, from contract research, analysis, scientific software development, to designing, deploying and refining the high performance IT infrastructures that are required to support life science informatics.

QFAB Bioinformatics has not listed any services.

DNA Sequencing Data Analysis
Price on request
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Bioinformatics
Starting at $136.00 per hour

QFAB provides a broad range of bioinformatics services to support the data management and analysis needs of life-science researchers. Our areas of expertise include NGS, genotyping, microarrays, systems biology, proteomics and cheminformatics analysis, and are available on a per project basis or through a FTE model.

QFAB provides a broad range of bioinformatics services to support the data management and analysis needs of life-science researchers. Our areas of expertise include NGS, genotyping, microarrays, systems biology, proteomics and cheminformatics analysis, and are available on a per project basis or through a FTE model.

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Bioinformatics Training
Price on request

Biostatistics and R
High performance computing
Genomics virtual lab and Galaxy
NGS data analysis
Pathway and network analysis
Sequence annotation
Pattern and motif identification

Biostatistics and R
High performance computing
Genomics virtual lab and Galaxy
NGS data analysis
Pathway and network analysis
Sequence annotation
Pattern and motif identification

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Biostatistics
Price on request

Combination and integration of multiple datasets types
Univariate and multivariate analysis
Power calculation
Classification

Combination and integration of multiple datasets types
Univariate and multivariate analysis
Power calculation
Classification

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Compound Profiling
Price on request

QFAB supports drug discovery project with SAR analysis and SAR development using cheminformatics approaches

Prioritization of compounds and assays (Efficacy, Toxicity, ADME)
Provide databases and tools for compound registration and inventory
HTS data handling, mining and reporting
Design of compound libraries (diverse,... Show more »

QFAB supports drug discovery project with SAR analysis and SAR development using cheminformatics approaches

Prioritization of compounds and assays (Efficacy, Toxicity, ADME)
Provide databases and tools for compound registration and inventory
HTS data handling, mining and reporting
Design of compound libraries (diverse, focused or targeted)
Combinatorial library design and library enumeration
Undesirable molecule elimination
Hit-to-lead optimization
ADME and toxicity profiling

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Data hosting
Price on request

Research computing resources offered by QFAB enable the visualisation and analysis of large biological data sets and to address complex biological problems. QFAB develops custom software tools, data management systems and web interface for life sciences researchers.

QFAB supports large collaborative research projects where the... Show more »

Research computing resources offered by QFAB enable the visualisation and analysis of large biological data sets and to address complex biological problems. QFAB develops custom software tools, data management systems and web interface for life sciences researchers.

QFAB supports large collaborative research projects where the member groups are based in different locations. We develop online tools for project participants to securely store their own data, access other members’ data and allow real-time communication between collaborative group members.

Our ICT services include:

Database development
Web interface to biological databases
Data analysis web applications
Visualisation

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High Performance Computing
Price on request

Research Computing resources offered by QFAB include the CSIRO-NCI Cluster, a compute cluster and storage environment as well as the Systems Biology Platform, a state-of-the-art, scalable computational environment to analyse, model and infer biomolecular networks. QFAB also hosts a UCSC genome browser mirror which provides the... Show more »

Research Computing resources offered by QFAB include the CSIRO-NCI Cluster, a compute cluster and storage environment as well as the Systems Biology Platform, a state-of-the-art, scalable computational environment to analyse, model and infer biomolecular networks. QFAB also hosts a UCSC genome browser mirror which provides the ability to visualise and query the genomic annotations of over 50 species.

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Mass spectrometry data analysis
Price on request

Design
Picks detection and protein identification
Annotation
Quantitative analysis
Interpretation

We support data from most of the existing mass spectrometry platforms (SELDI, MALDI, iTRACK…)

Design
Picks detection and protein identification
Annotation
Quantitative analysis
Interpretation

We support data from most of the existing mass spectrometry platforms (SELDI, MALDI, iTRACK…)

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Microarray Data Analysis
Price on request

Design
Quality Control
Normalisation
Quantification : gene expression, exon level, copy number…
Differential samples comparison, and comparison with public datasets
Combination and integration with other data (chip, miRNA…)

Design
Quality Control
Normalisation
Quantification : gene expression, exon level, copy number…
Differential samples comparison, and comparison with public datasets
Combination and integration with other data (chip, miRNA…)

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NGS data analysis
Next generation sequencing data analysis
Price on request

Analysis of Illumina Hiseq, Roche 454 GS-FLX, Lifetech Solid and Iontorrent data:
- Whole genome sequencing data analysis
- de novo genome assembly
- RNAseq
- Transcript assembly
- ChipSeq
- Polymorphism detection and annotation
- Reference genomes mapping
- Structural and functional annotation
- Metagenomics
- smRNA discovery and annotation
- Exome resequencing

Analysis of Illumina Hiseq, Roche 454 GS-FLX, Lifetech Solid and Iontorrent data:
- Whole genome sequencing data analysis
- de novo genome assembly
- RNAseq
- Transcript assembly
- ChipSeq
- Polymorphism detection and annotation
- Reference genomes mapping
- Structural and functional annotation
- Metagenomics
- smRNA discovery and annotation
- Exome resequencing

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SNP and Genotype data management
Price on request

SNP
Microsatellites

SNP
Microsatellites

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Statistical Analysis
Price on request
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Systems Biology Analysis
Price on request

Integration and simultaneous analysis of multiple omics or clinical datasets
Pathway and network analysis
Enrichment analysis
Gene regulation studies
Visualisation (correlations, networks, genome browsers)

Integration and simultaneous analysis of multiple omics or clinical datasets
Pathway and network analysis
Enrichment analysis
Gene regulation studies
Visualisation (correlations, networks, genome browsers)

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Whole genome assembly
Price on request

de novo whole genome assembly

de novo whole genome assembly

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Whole Genome Sequencing Data Analysis
Starting at $500.00 per sample

Comprehensive analysis of whole genome sequencing data.

QFAB is also a partner of the Garvan Institute for the analysis of whole human genome sequenced on their Illumina Hiseq X Ten.

Core Analysis Service - From $500 per sample
- Quality control of raw sequence reads
- Mapping onto reference human genome
- Gene variants... Show more »

Comprehensive analysis of whole genome sequencing data.

QFAB is also a partner of the Garvan Institute for the analysis of whole human genome sequenced on their Illumina Hiseq X Ten.

Core Analysis Service - From $500 per sample
- Quality control of raw sequence reads
- Mapping onto reference human genome
- Gene variants analysis: rare and novel SNV detection, annotation and descriptive analysis (genes, miRNAs)
- Deliverables: BAM files, VCF files, report

Options - From $250 per sample
- Investigation of xenocontaminants
- Copy Number Variation analysis
- Trio analysis
- Rearrangements analysis
- Tumor-unique variants analysis
- Interactive genome reporting

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Data Analysis and Management
Price on request
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Biology
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Biostatistics & Bioinformatics
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Sequencing Data Analysis
Price on request
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Nucleic Acid Analysis
Price on request
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Nucleic Acid Data Analysis
Price on request
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Protein Data Analysis
Price on request
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Lead Identification and Validation
Price on request
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Drug Discovery & Development
Price on request
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Computational & Statistical Analysis
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Biochemistry & Molecular Biology
Price on request
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Drug Discovery
Price on request
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Nucleic Acid Services
Price on request
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