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OnRamp Bioinformatics

San Diego, CA, US

OnRamp Bio empowers researchers, biologists and scientists with answers and insights that they can understand and put to action. Too often, simple questions consume too much time resulting in complex answers that only lead to more questions. We provide intuitive results aligned with your objectives, so you don’t have to be a PhD bioinformatician to find the answers that matter.

Recognized as a best practice in Expert Review of Molecular Diagnostics, our scientific team is powered by our advanced software platform upon which more than 2500 analyses have been completed.

View our Services Brochure

Get better answers for your research with OnRamp Bio:
- Gene expression profiling, Gene Ontology and pathway analysis for transcriptomics
- Variant calling and interpretation for whole genome, exome or targeted studies
- Protein binding and... Show more »

OnRamp Bio empowers researchers, biologists and scientists with answers and insights that they can understand and put to action. Too often, simple questions consume too much time resulting in complex answers that only lead to more questions. We provide intuitive results aligned with your objectives, so you don’t have to be a PhD bioinformatician to find the answers that matter.

Recognized as a best practice in Expert Review of Molecular Diagnostics, our scientific team is powered by our advanced software platform upon which more than 2500 analyses have been completed.

View our Services Brochure

Get better answers for your research with OnRamp Bio:
- Gene expression profiling, Gene Ontology and pathway analysis for transcriptomics
- Variant calling and interpretation for whole genome, exome or targeted studies
- Protein binding and methylation sites for epigenetics studies
- Virus and bacterial diversity and abundance and functional classification for microbiome studies

With the rapid availability of microarray, next generation sequencing and mass spec technologies, Biologists, researchers and drug developers are now looking for assistance to streamline experiments from experimental design to interpretation so that they can leverage these technologies for greater insights.

Selected Publications
- Davis-Turak et al."Genomics pipelines and data integration: challenges and opportunities in the research setting" Vol. 0 , Iss. Ja,0 Expert Review Of Molecular Diagnostics
- Gary Hardiman, et al. "Systems analysis of the prostate transcriptome in African–American men compared with European–American men" Pharmacogenomics, July 2016 ,Vol. 17, No. 10 , Pages 1129-1143 (doi: 10.2217/pgs-2016-0025)
- Elvis Genbo Xu, et al. "Time- and Oil-Dependent Transcriptomic and Physiological Responses to Deepwater Horizon Oil in Mahi-Mahi (Coryphaena hippurus) Embryos and Larvae" Environmental Science & Technology 2016 50 (14), 7842-7851 DOI: 10.1021/acs.est.6b02205
- Xu, E. G. et al. Novel transcriptome assembly and comparative toxicity pathway analysis in mahi-mahi (Coryphaena hippurus) embryos and larvae exposed to Deepwater Horizon oil. Sci. Rep. 7, 44546; doi: 10.1038/srep44546 (2017)

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OnRamp Bioinformatics has not listed any services.

Gene Expression Profiling
Starting at $150.00 per sample

Comprehensive gene expression profiling and analysis
- Rapid analysis and interpretation of raw RNA-seq (transcriptome) sequence files (FASTQ) to gain insights into target genes, and overall expression levels
- Comprehensive analysis of upregulation and downregulation of genes
- Differentially expressed genes across... Show more »

Comprehensive gene expression profiling and analysis
- Rapid analysis and interpretation of raw RNA-seq (transcriptome) sequence files (FASTQ) to gain insights into target genes, and overall expression levels
- Comprehensive analysis of upregulation and downregulation of genes
- Differentially expressed genes across samples, time series, treatments or any other condition or criteria
- Sort, filter and identify key patterns and pathways in highly expressed gene signatures
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Intuitive results visualization with targeted data plots, charts, Venn diagrams, heatmaps and clustering that provides answers aligned with experimental objectives
- Differentially expressed gene lists
- Gene expression level lists, charts, tables, CSV files
- Pathway Analysis
- Gene Ontology
- Disease and miRNA regulators
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics, as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

Turnaround Time
- Setup & Data Transfer: 1-2 days
- Analysis: 1-2 days (depends on quantity of samples)

« Show less
Human
Mouse
Rat
Biology
Drug discovery
Next Generation Sequencing
Bioinformatics pipelines
Gene expression profiling
microarrays
RNA-Seq
NGS
NGS Panels
Genomics
Big Data Software Architecture
Differential Expression
Alignment
Trimming
Filtering
mRNA-seq
miRNA-seq
Data Management
Data Provenance
Analysis Provenance
Dedicated Private Cloud
FASTQ
Data Visualization
Data Exploration
Gene List
Filtered Gene List
Drug-Gene Regulation
Drug-Gene Interaction
RNAseq
RNA seq
Genetic Variant Analysis
Price on request

Comprehensive variant calling and analysis
- Rapid analysis and interpretation of raw DNA-seq files (FASTQ or BAM) to identify single nucleotide variants (SNVs)
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Annotated... Show more »

Comprehensive variant calling and analysis
- Rapid analysis and interpretation of raw DNA-seq files (FASTQ or BAM) to identify single nucleotide variants (SNVs)
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Annotated list of variants
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics, as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

Turnaround Time
- Setup & Data Transfer: 1-2 days
- Analysis: 1-7 days (depends on quantity of samples)

« Show less
Human
Mouse
Rat
Biology
Drug discovery
rare disease
Next Generation Sequencing
Bioinformatics pipelines
Genomics
Big Data Software Architecture
High-Performance Computing
Alignment
Trimming
Filtering
Data Management
Data Provenance
Analysis Provenance
Dedicated Private Cloud
FASTQ
Data Visualization
Data Exploration
DNA-Seq
Filtered Variant List
Rare Disease Variants
Gene List
Filtered Gene List
Experimental design
Price on request

Expert guidance for efficient and targeted Experimental Design
- Design your experiment to efficiently achieve your objectives
- Avoid frequent technical and scientific pitfalls with improperly designed genomic experiments
- Select the most cost-effective and appropriate... Show more »

Expert guidance for efficient and targeted Experimental Design
- Design your experiment to efficiently achieve your objectives
- Avoid frequent technical and scientific pitfalls with improperly designed genomic experiments
- Select the most cost-effective and appropriate technologies to generate optimal data (next-generation sequencing, microarrays, panels, mass spec, etc)
- Start your project with full confidence after feedback and review from our team of experts

Deliverables
- Consultation on proposed experimental design (phone/webex)
- Guidance on process and selection of sequence service providers
- Guidance on required data analysis and pipelines
- Presentation of recommendations (PDF Report)

Turnaround Time
- Initial meeting scheduled within 1-2 days
- Subsequent project completion: 1-2 days (depends on scope of project)

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Biology
Drug discovery
Next Generation Sequencing
Bioinformatics pipelines
microarrays
Genomics
Proteomics
Data Visualization
Data Validation
Data Exploration
RNA
DNA
Gene Pathway Analysis
Price on request
Request a quote for more information about this service.
DNA Sequencing Data Analysis
Price on request
Request a quote for more information about this service.
Genomics Data Analysis
Price on request
Request a quote for more information about this service.
Bioinformatics Experimental Design
Price on request
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Cap analysis gene expression sequencing data analysis
Price on request
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Bioinformatics Data Analysis
Price on request
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Biostatistics and Bioinformatics Services
Price on request
Request a quote for more information about this service.
Biostatistics & Bioinformatics
Price on request
Request a quote for more information about this service.
miRNA-Sequencing Data Analysis
Price on request
Request a quote for more information about this service.
Whole Genome Bisulfite Sequencing
Price on request
Request a quote for more information about this service.
Proteomics Data Analysis
Price on request
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Genome Data Analysis
Price on request
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Transcriptomics Data Analysis
Price on request
Request a quote for more information about this service.
Whole Exome Sequencing Data Analysis
Price on request
Request a quote for more information about this service.
Small RNA Sequencing Data Analysis
Price on request
Request a quote for more information about this service.
CRISPR Bioinformatics
Price on request
Request a quote for more information about this service.
miRNA Expression Profiling
Price on request

Comprehensive miRNA data analysis
- Rapid analysis of raw miRNA data files to gain insights into target genes, and overall expression levels
- Comprehensive analysis of upregulation and downregulation of genes, or downstream proteins
- Comparisons of differentially expressed genes across samples, time series, or any other... Show more »

Comprehensive miRNA data analysis
- Rapid analysis of raw miRNA data files to gain insights into target genes, and overall expression levels
- Comprehensive analysis of upregulation and downregulation of genes, or downstream proteins
- Comparisons of differentially expressed genes across samples, time series, or any other condition, or criteria
- Sort, filter and identify key patterns and pathways in highly expressed gene signatures
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Gene lists
- Interactive results visualization and exploration with dynamic data plots, charts, heatmaps and clustering
- Interactive Venn diagrams of gene lists to evaluate overall gene expression, including time series
- Target gene lists, charts, tables, CSV files
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics, as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

Turnaround Time
- Setup & Data Transfer: 1-2 days
- Analysis: 1-2 days (depends on quantity of samples)

« Show less
Human
Mouse
Rat
Biology
Drug discovery
Bioinformatics pipelines
Genomics
miRNA-seq
Data Visualization
Data Exploration
Gene List
Filtered Gene List
Drug-Gene Regulation
Drug-Gene Interaction
miRNA
DNA Methylation Analysis
Price on request

Comprehensive differential methylation analysis
- Rapid analysis of raw Methyl-seq or reduced representation bisulfite sequencing RRBS files (FASTQ) to identify methylation sites.
- Differential methylation analysis between conditions
- Industry standard tools published in peer-reviewed journals
- Collaborate and share... Show more »

Comprehensive differential methylation analysis
- Rapid analysis of raw Methyl-seq or reduced representation bisulfite sequencing RRBS files (FASTQ) to identify methylation sites.
- Differential methylation analysis between conditions
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Intuitive results visualization with targeted data plots, charts, Venn diagrams, heatmaps and clustering that provide answers aligned with experimental objectives
- Methylation site identification
- CpG island identification
- Differentially methylated site lists
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics, as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

Turnaround Time
- Setup & Data Transfer: 1-2 days
- Analysis: 1-5 days (depends on quantity of samples)

« Show less
Human
Mouse
Rat
Biology
Drug discovery
Next Generation Sequencing
Bioinformatics pipelines
Genomics
Big Data Software Architecture
Alignment
Trimming
Filtering
Data Management
Data Provenance
Analysis Provenance
Dedicated Private Cloud
FASTQ
Data Visualization
Data Exploration
Protein-DNA Interaction Analysis
Starting at $150.00 per sample

Comprehensive ChIP Analysis
- Rapid analysis of raw chromatin immunoprecipitation sequencing ChIP-seq files (FASTQ) to identify regions of protein interaction with DNA
- Annotate and analyze motifs on the predicted binding regions
- Differential analysis of binding between conditions
- Industry standard tools published in... Show more »

Comprehensive ChIP Analysis
- Rapid analysis of raw chromatin immunoprecipitation sequencing ChIP-seq files (FASTQ) to identify regions of protein interaction with DNA
- Annotate and analyze motifs on the predicted binding regions
- Differential analysis of binding between conditions
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Intuitive results visualization with targeted data plots, charts, Venn diagrams, heatmaps and clustering that provide answers aligned with experimental objectives
- ChIP QC reports
- Peaks files
- Annotations and motif analysis
- Differentially bound regions / genes
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics, as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

Turnaround Time
- Setup & Data Transfer: 1-2 days
- Analysis: 1-5 days (depends on quantity of samples)

« Show less
Human
Mouse
Rat
Biology
Drug discovery
Next Generation Sequencing
Bioinformatics pipelines
ChIP-Seq
Genomics
Big Data Software Architecture
Alignment
Trimming
Filtering
Data Management
Data Provenance
Analysis Provenance
Dedicated Private Cloud
FASTQ
Data Visualization
Data Exploration
Gene List
Filtered Gene List
Single cell gene expression analysis
Price on request

Comprehensive analysis of single cell gene expression
- Rapid analysis of raw RNA-seq (transcriptome) sequence files (FASTQ) to gain insights into target genes, and overall expression levels
- Comprehensive analysis of upregulated and downregulated genes
- Differentially expressed genes across samples, time series,... Show more »

Comprehensive analysis of single cell gene expression
- Rapid analysis of raw RNA-seq (transcriptome) sequence files (FASTQ) to gain insights into target genes, and overall expression levels
- Comprehensive analysis of upregulated and downregulated genes
- Differentially expressed genes across samples, time series, treatments or any other condition, or criteria
- de novo identification of unique cell sub-populations
- Sort, filter and identify key patterns and pathways in highly expressed gene signatures
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Intuitive results visualization with targeted data plots, charts, Venn diagrams, heatmaps and clustering that provide answers aligned with experimental objectives
- Differentially expressed gene lists
- Gene expression level and cell cluster lists, charts, tables, CSV files
- Presentation and discussion of results with project lead

Turnaround Time
- Setup & Data Transfer: 1-2 days
- Analysis: 1-2 days (depends on quantity of samples)

« Show less
Microarray data analysis
Price on request

Comprehensive microarray bioinformatics analysis
- Gene expression profiling, Gene Ontology and pathway analysis for transcriptomics
- Variant calling and interpretation for whole genome, exome or targeted studies
- Protein binding and methylation sites for epigenetics studies
- Custom pipelines and... Show more »

Comprehensive microarray bioinformatics analysis
- Gene expression profiling, Gene Ontology and pathway analysis for transcriptomics
- Variant calling and interpretation for whole genome, exome or targeted studies
- Protein binding and methylation sites for epigenetics studies
- Custom pipelines and analyses

Deliverables
- Intuitive results visualization
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

« Show less
Human
Mouse
Rat
Biology
Drug discovery
microarrays
Genomics
Microarray
NGS data analysis
Next generation sequencing data analysis
Price on request

Comprehensive bioinformatics analysis
- Gene expression profiling, Gene Ontology and pathway analysis for transcriptomics
- Variant calling and interpretation for whole genome, exome or targeted studies
- Protein binding and methylation sites for epigenetics studies
- Virus and bacterial diversity and abundance and... Show more »

Comprehensive bioinformatics analysis
- Gene expression profiling, Gene Ontology and pathway analysis for transcriptomics
- Variant calling and interpretation for whole genome, exome or targeted studies
- Protein binding and methylation sites for epigenetics studies
- Virus and bacterial diversity and abundance and functional classification for microbiome studies
- Custom pipelines and analyses

Deliverables
- Intuitive results visualization
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

« Show less
Human
Mouse
Rat
Biology
Drug discovery
Next Generation Sequencing
Bioinformatics pipelines
Genomics
Sequencing Data Analysis
Price on request

Comprehensive bioinformatics analysis
- Gene expression profiling, Gene Ontology and pathway analysis for transcriptomics
- Variant calling and interpretation for whole genome, exome or targeted studies
- Protein binding and methylation sites for epigenetics studies
- Virus and bacterial diversity and abundance and... Show more »

Comprehensive bioinformatics analysis
- Gene expression profiling, Gene Ontology and pathway analysis for transcriptomics
- Variant calling and interpretation for whole genome, exome or targeted studies
- Protein binding and methylation sites for epigenetics studies
- Virus and bacterial diversity and abundance and functional classification for microbiome studies
- Custom pipelines and analyses

Deliverables
- Intuitive results visualization
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

« Show less
Human
Mouse
Rat
Biology
Drug discovery
Next Generation Sequencing
Bioinformatics pipelines
microarrays
Genomics
Bioinformatics
Price on request

Comprehensive bioinformatics analysis
- Gene expression profiling, Gene Ontology and pathway analysis for transcriptomics
- Variant calling and interpretation for whole genome, exome or targeted studies
- Protein binding and methylation sites for epigenetics studies
- Virus and bacterial diversity and abundance and... Show more »

Comprehensive bioinformatics analysis
- Gene expression profiling, Gene Ontology and pathway analysis for transcriptomics
- Variant calling and interpretation for whole genome, exome or targeted studies
- Protein binding and methylation sites for epigenetics studies
- Virus and bacterial diversity and abundance and functional classification for microbiome studies
- Custom pipelines and analyses

Deliverables
- Intuitive results visualization
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

« Show less
Human
Mouse
Rat
Biology
Drug discovery
Next Generation Sequencing
Bioinformatics pipelines
microarrays
NGS
NGS Panels
Genomics
RNA-Seq Data Analysis
Starting at $150.00 per sample

RNA-seq Data Analysis & Data Storage
- Rapid analysis and interpretation of raw RNA-seq (transcriptome) sequence files (FASTQ) to gain insights into target genes, and overall expression levels
- Comprehensive analysis of upregulation and downregulation of genes
- Comparisons of differentially expressed genes across... Show more »

RNA-seq Data Analysis & Data Storage
- Rapid analysis and interpretation of raw RNA-seq (transcriptome) sequence files (FASTQ) to gain insights into target genes, and overall expression levels
- Comprehensive analysis of upregulation and downregulation of genes
- Comparisons of differentially expressed genes across samples, time series, or any other condition, or criteria
- Differentially expressed genes across samples, time series, treatments or any other condition or criteria
- Sort, filter and identify key patterns and pathways in highly expressed gene signatures
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Intuitive results visualization with targeted data plots, charts, Venn diagrams, heatmaps and clustering that provides answers aligned with experimental objectives
- Differentially expressed gene lists
- Gene expression level lists, charts, tables, CSV files
- Pathway Analysis
- Gene Ontology
- Disease and miRNA regulators
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics, as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

Turnaround Time
- Setup & Data Transfer: 1-2 days
- Analysis: 1-2 days (depends on quantity of samples)

« Show less
Human
Mouse
Rat
Biology
Drug discovery
Next Generation Sequencing
Bioinformatics pipelines
Gene expression profiling
RNA-Seq
NGS
NGS Panels
Genomics
Big Data Software Architecture
Differential Expression
Alignment
Trimming
Filtering
mRNA-seq
miRNA-seq
Data Management
Data Provenance
Analysis Provenance
Dedicated Private Cloud
FASTQ
Data Visualization
Data Exploration
Gene List
Filtered Gene List
Drug-Gene Regulation
Drug-Gene Interaction
RNAseq
RNA seq
ChIP-Seq Data Analysis
Chromatin immunoprecipitation-sequencing data analysis
Starting at $150.00 per sample

ChIP-Seq Data Analysis & Data Storage
- Rapid analysis of raw chromatin immunoprecipitation sequencing ChIP-seq files (FASTQ) to identify regions of protein interaction with DNA
- Annotate and analyze motifs on the predicted binding regions
- Differential analysis of binding between conditions
- Industry standard... Show more »

ChIP-Seq Data Analysis & Data Storage
- Rapid analysis of raw chromatin immunoprecipitation sequencing ChIP-seq files (FASTQ) to identify regions of protein interaction with DNA
- Annotate and analyze motifs on the predicted binding regions
- Differential analysis of binding between conditions
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Intuitive results visualization with targeted data plots, charts, Venn diagrams, heatmaps and clustering that provide answers aligned with experimental objectives
- ChIP QC reports
- Peaks files
- Annotations and motif analysis
- Differentially bound regions / genes
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics, as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

Turnaround Time
- Setup & Data Transfer: 1-2 days
- Analysis: 1-5 days (depends on quantity of samples)

« Show less
Human
Mouse
Rat
Biology
Drug discovery
Next Generation Sequencing
Gene expression profiling
Illumina
ChIP-Seq
Genomics
Private Cloud Servers
Big Data Software Architecture
High-Performance Computing
Differential Expression
Alignment
Trimming
Filtering
Data Management
Data Provenance
Analysis Provenance
FASTQ
FASTA
Data Visualization
Data Validation
Data Exploration
Quality Control
Gene List
Filtered Gene List
Whole Exome Data Analysis
Price on request

Advanced bioinformatics analysis and visual analytics for Whole Exome Sequencing (DNA-seq)
- Rapid analysis of raw DNA-seq files (FASTQ) to identify single nucleotide variants (SNVs)
- Analysis available for single genome, trios, cohorts, or tumor-normal pairs
- Industry standard tools published in peer-reviewed... Show more »

Advanced bioinformatics analysis and visual analytics for Whole Exome Sequencing (DNA-seq)
- Rapid analysis of raw DNA-seq files (FASTQ) to identify single nucleotide variants (SNVs)
- Analysis available for single genome, trios, cohorts, or tumor-normal pairs
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Intuitive results report and data visualization with targeted charts, and Venn diagrams, that provide answers aligned with experimental objectives
- Annotated variant lists and interpretation
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics, as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

Turnaround Time
- Setup & Data Transfer: 1-2 days
- Analysis: 1-7 days (depends on quantity of samples)

« Show less
Human
Mouse
Rat
Genome Analysis ToolKit
GATK
genomics
Humanized mouse
Biology
rare disease
Next Generation Sequencing
Bioinformatics pipelines
Exome sequencing
Genomics
Immunooncology
Any
Big Data Software Architecture
Alignment
Trimming
Any
Data Management
Data Provenance
Analysis Provenance
Dedicated Private Cloud
High Performance Computing
FASTQ
FASTA
Data Visualization
Data Validation
Data Exploration
Variant Calling
Tumor-Normal
Pedigree
Adhoc-Variant Analysis
DNA-Seq
Whole Exome Sequencing
Cancer
Diagnostic
Rare Disease Variants
Diagnostics
Whole Genome/Exome Sequencing Data Analysis
Price on request

Advanced bioinformatics analysis and visual analytics for Whole Genome Sequencing (DNA-seq)
- Rapid analysis and interpretation of raw DNA-seq files (FASTQ) to identify single nucleotide variants (SNVs)
- Analysis available for single genome, trios, cohorts, or tumor-normal pairs
- Industry standard tools published in... Show more »

Advanced bioinformatics analysis and visual analytics for Whole Genome Sequencing (DNA-seq)
- Rapid analysis and interpretation of raw DNA-seq files (FASTQ) to identify single nucleotide variants (SNVs)
- Analysis available for single genome, trios, cohorts, or tumor-normal pairs
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Annotated list of variants
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics, as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

Turnaround Time
- Setup & Data Transfer: 1-2 days
- Analysis: 1-7 days (depends on quantity of samples)

« Show less
Human
Mouse
Rat
Genome Analysis ToolKit
GATK
genomics
Humanized mouse
Biology
genetic
rare disease
Genomics
Diseased human tissue
Normal Human tissue
Client-specified
Immunooncology
Any
Big Data Software Architecture
Alignment
Trimming
Filtering
Any
Data Management
Data Provenance
Analysis Provenance
Dedicated Private Cloud
High Performance Computing
FASTQ
FASTA
Variant Calling
Tumor-Normal
Pedigree
Adhoc-Variant Analysis
DNA-Seq
Cancer
Diagnostic
Whole Genome Sequencing
Whole Genome
Filtered Variant List
Damaging Variants
Non-common Variants
Rare Disease Variants
Diagnostics
Metagenomics Data Analysis
Price on request

Metagenomics Data Analysis & Data Storage
- Rapid analysis of 16s or shotgun metagenomics data files
- Gain insight into communities of microorganisms found in environmental samples
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research... Show more »

Metagenomics Data Analysis & Data Storage
- Rapid analysis of 16s or shotgun metagenomics data files
- Gain insight into communities of microorganisms found in environmental samples
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Lists and relative abundances of microorganisms found in environmental samples
- Functional pathway identification
- Interactive results visualization and exploration
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics, as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

Turnaround Time
- Setup & Data Transfer: 1-2 days
- Analysis: 1-5 days (depends on quantity of samples)

« Show less
Biology
Shotgun DNA Sequencing
16S
Bioinformatics pipelines
Genomics
Big Data Software Architecture
High-Performance Computing
Data Management
Data Provenance
Analysis Provenance
Dedicated Private Cloud
Data Visualization
Data Exploration
Metagenome
Metatranscriptomics Data Analysis
Price on request

Metranscriptomics Data Analysis & Data Storage
- Gain insight into genes expressed in environmental samples
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Interactive results visualization and exploration
-... Show more »

Metranscriptomics Data Analysis & Data Storage
- Gain insight into genes expressed in environmental samples
- Industry standard tools published in peer-reviewed journals
- Collaborate and share results across any extended research team

Deliverables
- Interactive results visualization and exploration
- Presentation and discussion of results with project lead

Recognized by Expert Review of Molecular Diagnostics, as a best practice in bioinformatics, OnRamp Bio streamlines data analyses with a leading scientific team, interactive software and dedicated cloud systems.

Focus on what to do with your results, as opposed to how to get them.

Turnaround Time
- Setup & Data Transfer: 1-2 days
- Analysis: 1-5 days (depends on quantity of samples)

« Show less
Biology
Bioinformatics pipelines
Genomics
Big Data Software Architecture
Data Management
Data Provenance
Analysis Provenance
Dedicated Private Cloud
Data Visualization
Data Exploration
Metatranscriptome
Data Management Services
Price on request

Solve your data management and IT challenges
- With decades or experience in life sciences information technology and data management, our team of highly-trained specialists is available to deliver a cloud or on-premise storage and software solution that works for you.

Deliverables
- IT and data management solution that fits your needs

Solve your data management and IT challenges
- With decades or experience in life sciences information technology and data management, our team of highly-trained specialists is available to deliver a cloud or on-premise storage and software solution that works for you.

Deliverables
- IT and data management solution that fits your needs

« Show less
Biology
Drug discovery
Genomics
Private Cloud Servers
Big Data Software Architecture
High-Performance Computing
Data Management
Data Provenance
Analysis Provenance
Dedicated Private Cloud
Data Visualization
Data Validation
Data Exploration
Bioinformatics Consulting
Price on request

Custom bioinformatics analyses
- Advanced bioinformatics consulting and custom analyses performed by our team of highly-trained specialists
- Experienced with a wide range of pipelines and data types
- Industry standard tools published in peer-reviewed journals
- Assistance with experiment design. Start your project off... Show more »

Custom bioinformatics analyses
- Advanced bioinformatics consulting and custom analyses performed by our team of highly-trained specialists
- Experienced with a wide range of pipelines and data types
- Industry standard tools published in peer-reviewed journals
- Assistance with experiment design. Start your project off on the right foot by designing an experiment that will deliver the answers you need.

Deliverables
- As requested

Turnaround Time
- Case dependent

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Human
Mouse
Rat
Biology
Drug discovery
Next Generation Sequencing
Bioinformatics pipelines
microarrays
ChIP-Seq
RNA-Seq
NGS
NGS Panels
Genomics
Biomarker analysis
Any
Big Data Software Architecture
High-Performance Computing
Differential Expression
mRNA-seq
miRNA-seq
Any
Data Management
Data Provenance
Analysis Provenance
Dedicated Private Cloud
Data Visualization
Data Validation
Data Exploration
DNA-Seq
Whole Exome Sequencing
Whole Genome
Filtered Gene List
Drug-Gene Regulation
Drug-Gene Interaction
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2017-09-19 02:53:14 -0700

Net Promoter Score of 9 received for Single cell gene expression analysis.

Additional Ratings: satisfaction with deliverable: 9, satisfaction with timeliness: 9.
2017-09-07 08:17:59 -0700

Net Promoter Score of 8 received for Transcriptomics Data Analysis.

Additional Ratings: satisfaction with deliverable: 8, satisfaction with timeliness: 10.
June 8, 2017

Positive review received for miRNA Expression Profiling:

"It was pleasure working with OnRamp Bioinformatics. We were provided with good quality microRNA profiling data for an affordable price. OnRamp Bioinformatics provided one-on-one support to explain the specifics of our data. Thank you so much for your work! We look forward to working with you in the future!"

April 4, 2017

Positive review received for RNA-Seq Data Analysis:

"I and my colleagues worked with OnRamp Bioinformatics for Gene Expression analysis. This service was great and very prompt and the cost was reasonable. We would definitely recommend this service."

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2017-02-22 19:09:01 -0800

"I've had the opportunity to work closely with the Onramp team for the last two years. Together we have completed hundreds of analyses. Their software solutions and team have been instrumental to advancing our research at MUSC. Jeremy and Roshni on the bioinformatics team are great. They've been responsive and insightful - and even seem like an extension of our team at times!"

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2017-02-22 09:15:25 -0800

I highly recommend OnRamp for their Bioinformatics expertise. I have worked with them on several genomics and metagenomics projects and the team is professional, completes the work on deadline and budget, and generated results we hadn't expected.

OnRamp will work with you every step of the way, from project inception, through interfacing with sequencing partners, through developing novel informatics solutions for your project.

OnRamps bioinformatics platform has many unique attributes that make it appealing, but their data and analysis tracking is just amazing: provenance for all your analyses from the minute the sequences arrive.

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2017-02-22 06:58:21 -0800

OnRamp Bioinformatics offers a great window of opportunity for the future of personalized medicine. Tim is an individual devoted to his work and he will do anything at his reach to help you achieve your goals. I highly recommend his team for anyone who has an interest in integrating molecular data into research and clinical practice.

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