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KCCG Core Facility

ic 9.4/10 Overall Rating 91% Positive
ic 36 Orders Completed
Sydney, New South Wales, AU

About KCCG Core Facility

The KCCG Core Facility is a centre of excellence for genomic research. We offer high quality, large-scale, low-cost whole genome sequencing on the Illumina HiSeq X™Ten platform together with our (optional) Precision FDA award-winning bioinformatics analysis.

Our Services (11)


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Whole Genome Sequencing

Starting at $1,000.00 per sample

HISEQ X TEN WHOLE GENOME SEQUENCING

  • Clinically accredited laboratory (ISO 15189) and Precision FDA award-winning bioinformatics analysis
  • TruSeq Nano or KAPA PCR-Free library preparation
  • Flexible choice of 15x (TruSeq Nano) or 30x coverage for human DNA (as defined by Illumina^)
  • Flexible choice of ≥50Gb (TruSeq Nano)... Show more »

HISEQ X TEN WHOLE GENOME SEQUENCING

  • Clinically accredited laboratory (ISO 15189) and Precision FDA award-winning bioinformatics analysis
  • TruSeq Nano or KAPA PCR-Free library preparation
  • Flexible choice of 15x (TruSeq Nano) or 30x coverage for human DNA (as defined by Illumina^)
  • Flexible choice of ≥50Gb (TruSeq Nano) or ≥100 Gb raw data
  • Guaranteed ≥75% bases above Q30
  • 150bp paired-end read length
  • Includes DNA and library QC
  • Delivery of FASTQ data via online portal DNAnexus or hard drive (additional cost) with clinical-grade security and privacy
  • Turn around time - 6 weeks from sample receipt to data delivery

Add-on services:
- Precision FDA award-winning bioinformatics analysis using gold-standard alignment software GATK and variant calling software BWA to generate best practice BAM and VCF files
- Hard drive delivery

^ in line with Illumina’s ‘Sequencing Coverage Calculation Methods for Human WGS’ documentation


The HiSeq X™ Ten system is exclusively for whole genome sequencing. Sequencing services are presently available for research purposes only. Services are not available to members of the public or for personal sequencing. Researchers are responsible for ensuring that all relevant ethics approvals have been obtained prior to providing samples.


Please refer to the Resources section for additional submission information.


Instrumentation: HiSeq X Ten

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Illumina HiSeq X Ten Human Plants Mouse Non-human Illumina TruSeq Nano DNA library prep kit Kapa Hyper PCR-Free sample prep kit Genomics Show 8 more tags Show less

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10X Genomics Chromium Sequencing

Starting at $1,450.00 per sample

The Chromium Genome Solution in combination with the HiSeq X Ten unlocks the analysis of large and complex rearrangements of the genome.

  • 30x coverage for human DNA
  • ≥100 Gb raw data
  • ≥75% bases above Q30
  • 150bp paired-end read length
  • Includes DNA and library QC
  • Delivery of FASTQ data via online portal DNAnexus or... Show more »

The Chromium Genome Solution in combination with the HiSeq X Ten unlocks the analysis of large and complex rearrangements of the genome.

  • 30x coverage for human DNA
  • ≥100 Gb raw data
  • ≥75% bases above Q30
  • 150bp paired-end read length
  • Includes DNA and library QC
  • Delivery of FASTQ data via online portal DNAnexus or hard drive (additional cost) with clinical-grade security and privacy
  • Turn around time - upon request

Add-on services:
- Chromium Genome Solution library preparation
- Precision FDA award-winning bioinformatics analysis using gold-standard alignment software GATK and variant calling software BWA to generate best practice BAM and VCF files
- Hard drive delivery


Please refer to the Resources section for additional submission information.


Instrumentation: 10x Chromium System

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Human Non-human Chromium Genomics Solution

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Bioinformatics

Starting at $100.00 per sample

Precision FDA award-winning bioinformatics analysis using gold-standard alignment software GATK and variant calling software BWA to generate best practice BAM and VCF files

Garvan’s KCCG team achieved the highest overall precision in detecting SNPs in the unknown genome, in an international competition designed to test the... Show more »

Precision FDA award-winning bioinformatics analysis using gold-standard alignment software GATK and variant calling software BWA to generate best practice BAM and VCF files

Garvan’s KCCG team achieved the highest overall precision in detecting SNPs in the unknown genome, in an international competition designed to test the performance of genome informatics pipelines worldwide. The team’s precision level of over 99.98% earned them the “SNP Precision” award. In addition, the team gained several commendations for both sensitivity and precision in detecting insertions and deletions.

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Burrows-Wheeler Aligner Genome Analysis ToolKit v3

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DNA Sequencing

Price on request
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DNA Services

Price on request
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Biostatistics & Bioinformatics

Price on request
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Computational Modeling

Price on request
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Next Generation Sequencing (NGS)

Price on request
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Sequencing data in FASTQ

Price on request
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Biochemistry & Molecular Biology

Price on request
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Nucleic Acid Services

Price on request
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Kerith Rae Dias

Senior Genomics Projects Officer
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Senel Idrisoglu

Projects Officer
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Dilshan Kalpage

Projects Officer
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Gabrielle Stevenson

Project Officer
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Garvan Services Standard T&C_Final_V1.0_4Sep2018.pdf

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HiSeq-X-30x-Coverage-Technical-Note.pdf

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KCCGCF_Sequencing Services_Sample and Results Guidelines_Final_V1.0_5Sep2018.pdf

  • Positive review for Whole Genome Sequencing:

    August 2018

    "Genome.One is the best DNA sequencing provider in Australasia. Their combination of the latest equipment, highly competent technicians and excellent customer service is world class. With the help of Genome.One we have successfully sequenced the genomes of all known living kakapo. This unprecedented genomic data set will help shape kakapo conservation decision making for years to come. It may prove the difference between preserving or losing one of the world's rarest and most unique birds."

  • Positive review for Whole Genome Sequencing:

    December 2016

    "The service is awesome. We had several delays and the facility is very accommodating. The service was also very quick and data quality is good. Overall we had a very good experience with this facility. Thank you."

  • Positive review for Whole Genome Sequencing:

    November 2016

    "We were very happy with the service offered by Kinghorn"

  • Negative review for Whole Genome Sequencing:

    July 2016

    "it will be hard to make the decision. the major difficulty is the headache sample shipping process, with so many legal/administration approval/lawyer involved/shipping restriction although Kinghorn Center provided excellent actual sequencing work. I would strongly suggest to simplify the sample shipping system, with a one-hit for all, to benefit potential customers around the world."

KCCG Core Facility has not received any endorsements.