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Japan Bioinformatics

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Shibuya, JP

About Japan Bioinformatics

Founded: 2007 Type: Privately Held Size: 11-50 employees

Japan Bioinformatics KK is a Tokyo based biotechnology company specializing in bioinformatic software and data analysis.

Products:

  • Simbiot: Secure, easy-to-use, web and cloud-enabled software for management and analysis NGS data.
  • SimGene: Free iOS and Android app for access to gene annotation... Show more »

Japan Bioinformatics KK is a Tokyo based biotechnology company specializing in bioinformatic software and data analysis.

Products:

  • Simbiot: Secure, easy-to-use, web and cloud-enabled software for management and analysis NGS data.
  • SimGene: Free iOS and Android app for access to gene annotation information. Includes integrated genome browser. Available from Apple and Android store.
  • SimAlign: Free iOS and Android app interfacing to NCBI BLAST+ service. Available from Apple and Android store.

Our services include RNA-Seq, ChIP-Seq, miRNA-Seq, CAGE-Seq, mutation detection for amplicons, exomes and whole genomes as well as de-novo assembly and annotation of small genomes and transcriptomes. We also offer project management services.

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Our Services (17)


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CAGE-Seq

Cap Analysis Gene Expression Sequencing
Starting at $300.00 per sample

Cap Analysis Gene Expression (CAGE) is a variation on a traditional RNA-Seq protocol that allows identification of transcription start sites as well as expression analysis. Includes clustering and quantification of transcription start sites as well as traditional quantification of genes and transcripts (isoforms). We support all... Show more »

Cap Analysis Gene Expression (CAGE) is a variation on a traditional RNA-Seq protocol that allows identification of transcription start sites as well as expression analysis. Includes clustering and quantification of transcription start sites as well as traditional quantification of genes and transcripts (isoforms). We support all species with reference in Ensembl or NCBI. Analysis results delivered in a written report with appropriate citations and via an on-line platform. Each analysis project includes 2-week access to Simbiot, our proprietary system for management and analysis of NGS data, with integrated genome browser and other visualization and annotation tools.

Price may vary depending on sample size.

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ChIP-Seq Data Analysis

Chromatin immunoprecipitation-sequencing data analysis
Starting at $300.00 per sample

Detection and quantification of regions and peaks generated by chromatin immunoprecipitation experiments. Also may include differential analysis of peak intensities. We support all species with reference in Ensembl or NCBI. Analysis results delivered in a written report with appropriate citations and via an on-line platform.... Show more »

Detection and quantification of regions and peaks generated by chromatin immunoprecipitation experiments. Also may include differential analysis of peak intensities. We support all species with reference in Ensembl or NCBI. Analysis results delivered in a written report with appropriate citations and via an on-line platform. Each analysis project includes 2-week access to Simbiot, our proprietary system for management and analysis of NGS data, with integrated genome browser and other visualization and annotation tools.

Price may vary depending on sample size.

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DNA Amplification

Starting at $300.00 per sample

Identification and genotyping of SNPs as well as identification of short insertions and deletions, includes classification based on genomic features (e.g., coding, non-coding, splice sites) as well as codon and amino acid impact. We support all species with reference in Ensembl or NCBI. Analysis results delivered in a written... Show more »

Identification and genotyping of SNPs as well as identification of short insertions and deletions, includes classification based on genomic features (e.g., coding, non-coding, splice sites) as well as codon and amino acid impact. We support all species with reference in Ensembl or NCBI. Analysis results delivered in a written report with appropriate citations and via an on-line platform. Each analysis project includes 2-week access to Simbiot, our proprietary system for management and analysis of NGS data, with integrated genome browser and other visualization, annotation and filtering tools.

Price may vary depending on sample size.

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Project Management

Price on request

NGS projects are complex and require proper design, library construction as well as sequencing setup to make sure they can yield the desired results. We can provide assistance with managing the entire project, including design recommendations as well as library construction and sequencing through our CRO partners.

Please contact us for pricing information

NGS projects are complex and require proper design, library construction as well as sequencing setup to make sure they can yield the desired results. We can provide assistance with managing the entire project, including design recommendations as well as library construction and sequencing through our CRO partners.

Please contact us for pricing information

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RNA-Seq Data Analysis

Starting at $300.00 per sample

Includes quantification of genes, transcripts (isoforms) and some annotated non-coding RNAs as well as expression analysis or time course analysis. We support all species with reference in Ensembl or NCBI. Analysis results delivered in a written report with appropriate citations and via an on-line platform. Each analysis... Show more »

Includes quantification of genes, transcripts (isoforms) and some annotated non-coding RNAs as well as expression analysis or time course analysis. We support all species with reference in Ensembl or NCBI. Analysis results delivered in a written report with appropriate citations and via an on-line platform. Each analysis project includes 2-week access to Simbiot, our proprietary system for management and analysis of NGS data, with integrated genome browser and other visualization and annotation tools.

Price may vary depending on sample size.

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Transcriptome Assembly

Starting at $6,000.00 per sample

Assembly and annotation of transcriptomes. May includes quantification of gene and transcript (isoform) expression as well as differential expression analysis.

Price is per project and may vary depending on data size.

Assembly and annotation of transcriptomes. May includes quantification of gene and transcript (isoform) expression as well as differential expression analysis.

Price is per project and may vary depending on data size.

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Whole Genome Assembly

Starting at $300.00 per sample

Identification and genotyping of SNPs as well as identification of short insertions and deletions, includes classification based on genomic features (e.g., coding, non-coding, splice sites) as well as codon and amino acid impact. We support all species with reference in Ensembl or NCBI. Analysis results delivered in a written... Show more »

Identification and genotyping of SNPs as well as identification of short insertions and deletions, includes classification based on genomic features (e.g., coding, non-coding, splice sites) as well as codon and amino acid impact. We support all species with reference in Ensembl or NCBI. Analysis results delivered in a written report with appropriate citations and via an on-line platform. Each analysis project includes 2-week access to Simbiot, our proprietary system for management and analysis of NGS data, with integrated genome browser and other visualization, annotation and filtering tools.

Price may vary depending on sample size.

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miRNA-Sequencing Data Analysis

Starting at $300.00 per sample

Includes identification and quantification of miRNA elements based on miRBase as well as differential expression analysis. Analysis results delivered in a written report with appropriate citations and via an on-line platform. Each analysis project includes 2-week access to Simbiot, our proprietary system for management and... Show more »

Includes identification and quantification of miRNA elements based on miRBase as well as differential expression analysis. Analysis results delivered in a written report with appropriate citations and via an on-line platform. Each analysis project includes 2-week access to Simbiot, our proprietary system for management and analysis of NGS data, with integrated genome browser and other visualization and annotation tools.

Price may vary depending on sample size.

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Nucleic Acid Analysis

Price on request
Request a quote for more information about this service.

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Sequencing Data Analysis and Management

Price on request
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DNA Services

Price on request
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Nucleic Acid Data Analysis

Price on request
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Biochemistry & Molecular Biology

Price on request
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RNA Services

Price on request
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Nucleic Acid Services

Price on request
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Process Consulting

Price on request
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Biology

Price on request
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Boris Umylny

President

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