1324437006000

Genome Project Solutions

Hercules, California, US

Genome Project Solutions, Inc. has extensive capabilities in bioinformatics, to include producing custom software, broad experience in high-throughput DNA sequencing, gene expression studies, and related molecular biology techniques, expertise in evolutionary and functional genomics, proteomics, developmental biology, and many other fields, and familiarity with the policies and programs of governmental and other funding agencies. This includes the applications of genomics research to areas such as biodefense, ecology, medicine, pharmacology, and agriculture.

Genome Project Solutions plays varying roles depending on the needs of each project. For some, we may simply provide advice on acquiring funding, planning and managing projects, or promoting particular genome projects at government agencies. For others, we may participate by providing one or a few discrete genomic or informatic products. For still others, we... Show more »

Genome Project Solutions, Inc. has extensive capabilities in bioinformatics, to include producing custom software, broad experience in high-throughput DNA sequencing, gene expression studies, and related molecular biology techniques, expertise in evolutionary and functional genomics, proteomics, developmental biology, and many other fields, and familiarity with the policies and programs of governmental and other funding agencies. This includes the applications of genomics research to areas such as biodefense, ecology, medicine, pharmacology, and agriculture.

Genome Project Solutions plays varying roles depending on the needs of each project. For some, we may simply provide advice on acquiring funding, planning and managing projects, or promoting particular genome projects at government agencies. For others, we may participate by providing one or a few discrete genomic or informatic products. For still others, we may establish and manage a large consortium of scientists for a complex project such as sequencing and analyzing a complete eukaryotic genome. Initial consultations are free of charge and commitment.

In particular, we offer the PHRINGE pipeline, a tool for whole genome evolutionary analysis that takes as input the complete gene set of various organisms and determines all orthologous and paralogous relationships. The output includes comparisons of intron-exon structures, multiple sequence alignments, evolutionary trees for all genes, and the relative locations of all orthologous genes mapped onto scaffolds. See an example of the application of PHRINGE to the genomes of oomycetes and diatoms. PHRINGE is part of our GATOR genome analysis and presentation system currently under development.

We perform many types of studies (using capillary as well as "next generation", e.g. "Illumina / Solexa" and "Roche / 454" approaches), including:

— Sequencing whole prokaryotic and eukaryotic genomes
— Sequencing large (e.g., "BAC") clones, mitochondrial, plastid, and viral genomes
— Sequencing ESTs and full-length cDNAs
— Environmental sequencing (i.e., "metagenomics") and sequencing for SNP discovery
— Directed finishing for gap closure and quality improvement
— Sequence assembly and validation, gene annotation, function and pathway analyses
— Constructing DNA and RNA libraries, including large-insert libraries in BAC vectors
— Evolutionary analysis of genes, gene families, and genomes
— Creating maps of the relative arrangements of homologous genes in various genomes
— Designing databases and software to meet specific needs

Genome Project Solutions also provides educational and training opportunities

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Bioinformatics
Starting at $110.00 per hour
  • Sequence assembly and validation, gene annotation, function and pathway analyses
  • Assigning GO, KEGG, and protein domain identifications to genes
  • Gene expression analysis
  • Evolutionary analysis of genes, gene families, and genomes
  • Creating maps of the relative arrangements of homologous genes in various genomes
  • Sequence assembly and validation, gene annotation, function and pathway analyses
  • Assigning GO, KEGG, and protein domain identifications to genes
  • Gene expression analysis
  • Evolutionary analysis of genes, gene families, and genomes
  • Creating maps of the relative arrangements of homologous genes in various genomes
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DNA Sequencing
Starting at $110.00 per hour

Illumina and Roche (454) sequencing through contracts with various service providers

Illumina and Roche (454) sequencing through contracts with various service providers

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DNA Library Screening
Starting at $110.00 per hour

Constructing DNA and RNA libraries, including large-insert libraries in BAC vectors

Constructing DNA and RNA libraries, including large-insert libraries in BAC vectors

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Metagenomics Data Analysis
Starting at $110.00 per hour

Environmental sequencing (i.e., "metagenomics")

Environmental sequencing (i.e., "metagenomics")

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Illumina Sequencing
Starting at $110.00 per hour

Illumina and Roche (454) sequencing through contracts with various service providers

Illumina and Roche (454) sequencing through contracts with various service providers

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PHRINGE Pipeline
Phylogenetic Resources for the Interpretation of Genomes pipeline
Starting at $110.00 per hour

The PHRINGE (Phylogenetic Resources for the Interpretation of Genomes) pipeline is a tool for whole genome evolutionary analysis that takes as input the complete gene set of various organisms and determines all orthologous and paralogous relationships. The output includes comparisons of intron-exon structures, multiple sequence... Show more »

The PHRINGE (Phylogenetic Resources for the Interpretation of Genomes) pipeline is a tool for whole genome evolutionary analysis that takes as input the complete gene set of various organisms and determines all orthologous and paralogous relationships. The output includes comparisons of intron-exon structures, multiple sequence alignments, evolutionary trees for all genes, and the relative locations of all orthologous genes mapped onto scaffolds.

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Project Management
Starting at $110.00 per hour

Sequencing project planning and management

Sequencing project planning and management

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Protein Structure Determination
Starting at $110.00 per hour
Request a quote for more information about this service.
RNA Sequencing
Starting at $110.00 per hour

Gene expression analysis

Gene expression analysis

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Roche 454 Sequencing
Roche 454 next generation sequencing
Starting at $110.00 per hour
Request a quote for more information about this service.
Single Nucleotide Polymorphism (SNP) Genotyping
Starting at $110.00 per hour

Polymorphism (SNP, CNV) detection

Polymorphism (SNP, CNV) detection

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Signaling Pathway Analysis
Starting at $110.00 per hour
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Software Development
Starting at $110.00 per hour

Designing databases and software to meet specific needs

Designing databases and software to meet specific needs

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Whole Exome Sequencing (WES)
Starting at $110.00 per hour
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Whole Genome Assembly
Starting at $110.00 per hour
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Biology
Price on request
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DNA Services
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Cell Signaling Analyses
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Computational Modeling
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RNA Services
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Process Consulting
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Biochemistry & Molecular Biology
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Nucleic Acid Data Analysis
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Cell-Based Assays
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Exome Sequencing Services
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Data Services
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Equipment
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Biostatistics & Bioinformatics
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Targeted Gene Sequencing
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Next Generation Sequencing (NGS)
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Computer Science, Software Development, and IT Services
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Genotyping Services
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Sequencing Data Analysis
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Structural Biology
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Project and Process Management
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Nucleic Acid Analysis
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Nucleic Acid Services
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