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ContigExpress, LLC

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New York, New York, US

About ContigExpress, LLC

ContigExpress is the leading integrated genomics data service provider. We offer professional bioinformatics services, especially NGS data analysis services. Our unique value to our clients lies in our deep understanding of both biology and informatics. From project consultation, bio-IT infrastructure... Show more »

ContigExpress is the leading integrated genomics data service provider. We offer professional bioinformatics services, especially NGS data analysis services. Our unique value to our clients lies in our deep understanding of both biology and informatics. From project consultation, bio-IT infrastructure implementation, to data analysis, our experienced scientists deliver not only cost-effective customized informatic solutions but also their expert insights.

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Our Services (15)


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RNA-Seq Data Analysis

Price on request

Following is a list of common analysis items for RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project.

1) Experiment design consultation
2) Data QC and clean up
3) Alignment to a reference with mapping statistics
4) Gene and... Show more »

Following is a list of common analysis items for RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project.

1) Experiment design consultation
2) Data QC and clean up
3) Alignment to a reference with mapping statistics
4) Gene and transcript-based quantitation, RPKM/FPKM-based quantitation, Raw hit count-based quantitation
5) Differential expression analysis with p-value and FDR: Pair-wise comparison, Time course analysis, Clustering, Principle component analysis
6) Enrichment, pathway, and Gene Ontology (GO) analysis
7) Novel splicing variant analysis
8) Gene fusion and other structural variant analysis
9) SNP discovery and characterization
10) Written project report with analysis methods, publication-ready graphics, and references

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Global Methylation Analysis

Price on request

Following is a list of common analysis items for Methylation Sequencing, including MeDIP-Seq, hMeDIP-Seq, RRBS / Targeted Bisulfite-Seq, WGBS, and 5-mc RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project.

1) Experiment design... Show more »

Following is a list of common analysis items for Methylation Sequencing, including MeDIP-Seq, hMeDIP-Seq, RRBS / Targeted Bisulfite-Seq, WGBS, and 5-mc RNA-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project.

1) Experiment design consultation
2) Data QC and clean up
3) Methylation state-sensitive mapping
4) Methylation site calling
5) Gene assignment and methylation site annotation
6) Gene Ontology and pathway analysis
7) Written project report with analysis methods, publication-ready graphics, and references

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ChIP-Seq Data Analysis

Chromatin immunoprecipitation-sequencing data analysis
Price on request

Following is a list of common analysis items for ChIP-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project.

1) Experiment design consultation
2) Data QC and clean up
3) Alignment to a reference with mapping statistics
4) Peaking calling... Show more »

Following is a list of common analysis items for ChIP-Seq. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project.

1) Experiment design consultation
2) Data QC and clean up
3) Alignment to a reference with mapping statistics
4) Peaking calling with or without control samples
5) Gene assignment and peak annotation
6) Data clustering and visualization
7) Motif analysis
8) Pathway and network analysis
9) SNP discovery
10) Written project report with analysis methods, publication-ready graphics, and references

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Microarray Data Analysis

Price on request
Request a quote for more information about this service.

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Whole Genome Assembly

Price on request

Following is a list of common analysis items for Whole genome assembly. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project.

1) Experiment design consultation
2) Data QC and clean up
3) Contig assembly
4) Scaffolding and gap closure
5)... Show more »

Following is a list of common analysis items for Whole genome assembly. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project.

1) Experiment design consultation
2) Data QC and clean up
3) Contig assembly
4) Scaffolding and gap closure
5) Gene/ORF prediction
6) Gene annotation and classification via database search and comparison
7) Gene Ontology and pathway analysis
8) SNP discovery and analysis
9) Comparative genome analysis
10) Written project report with analysis methods, publication-ready graphics, and references

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Whole Genome Sequencing Data Analysis

Price on request

Following is a list of common analysis items for Whole Genome Resequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project.

1) Experiment design consultation
2) Data QC and clean up
3) Alignment to a reference with mapping statistics
4)... Show more »

Following is a list of common analysis items for Whole Genome Resequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project.

1) Experiment design consultation
2) Data QC and clean up
3) Alignment to a reference with mapping statistics
4) Local realignment
5) SNP and small indel calling
6) SNP/small indel characterization
7) SNP-based genotyping
8) Association study and linkage disequilibrium analysis
9) Structural variation detection and characterization
10) Written project report with analysis methods, publication-ready graphics, and references

Following is a list of common analysis items for Targeted Resequencing and Exome Sequencing. One of our expert bioinformaticians will work closely with you to identify a custom analysis workflow most appropriate for your project.

1) Experiment design consultation
2) Data QC and clean up
3) Alignment to a reference with mapping statistics
4) Local realignment
5) SNP and small indel calling
6) SNP/small indel characterization
7) Written project report with analysis methods, publication-ready graphics, and references

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Nucleic Acid Analysis

Price on request
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Epigenetic Studies

Price on request
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Nucleic Acid Data Analysis

Price on request
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Biochemistry & Molecular Biology

Price on request
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Nucleic Acid Services

Price on request
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DNA Services

Price on request
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Sequencing Data Analysis and Management

Price on request
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Biology

Price on request
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DNA Sequencing

Price on request

DNA Sequencing Services

DNA Sequencing Services

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