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Computational Genomics Core

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Bronx, New York, US

About Computational Genomics Core

The Computational Genomics Core (CGC) provides essential informatics resources and infrastructure for the analysis and interpretation of large genomic and epigenomic datasets, providing for timely and standardized delivery of data to investigators, and to organize and present tutorials for data retrieval and analysis using the provided tools and methodologies. The CGC will...

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The Computational Genomics Core (CGC) provides essential informatics resources and infrastructure for the analysis and interpretation of large genomic and epigenomic datasets, providing for timely and standardized delivery of data to investigators, and to organize and present tutorials for data retrieval and analysis using the provided tools and methodologies. The CGC will develop primary analysis pipelines, analysis and visualization tools for application-specific handling of data using open-source and commercial analysis tools. All tools will be maintained and deployed in a manner that optimally supports the research activities of individual investigators.

Selected Publications

  • R. F. Thompson, M. Suzuki, K. W. Lau, and J. M. Greally. A pipeline for the quantitative analysis of CG dinucleotide methylation using mass spectrometry. Bioinformatics, 25(17):2164–70, Sep 2009.
  • R. F. Thompson, M. Reimers, B. Khulan, M. Gissot, T. A. Richmond, Q. Chen, X. Zheng, K. Kim, and J. M. Greally. An analytical pipeline for genomic representations used for cytosine methylation studies. Bioinformatics, 24(9):1161–7, May 2008.
  • R. B. Calder, R. B. Beems, H. van Steeg, I. S. Mian, P. H. M. Lohman, and J. Vijg. MPHASYS: a mouse phenotype analysis system. BMC Bioinformatics, 8:183, 2007.
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Our Services (13)


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Computational Consulting

Price on request

Work with investigators to provide access to the appropriate tools for analysis of their data.

Work with investigators to provide access to the appropriate tools for analysis of their data.

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Sequencing Data Analysis and Management

Price on request

Primary and secondary interpretation of microarrays and next-generation sequencing data.

Pipeline Development
We also assist researchers and core facilities with the development of reproducible, accurate and time-saving pipelines and workflows for analysis of genome-scale experimental data.

Primary and secondary interpretation of microarrays and next-generation sequencing data.

Pipeline Development
We also assist researchers and core facilities with the development of reproducible, accurate and time-saving pipelines and workflows for analysis of genome-scale experimental data.

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Data Management

Price on request

Storage and delivery of large genomic data sets

Storage and delivery of large genomic data sets

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Educational Services

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We aid investigators in the analysis of their own data through tutorials covering software and analysis methodologies

We aid investigators in the analysis of their own data through tutorials covering software and analysis methodologies

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Project Management

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Nucleic Acid Analysis

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Nucleic Acid Services

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Biology

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Computational Modeling

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Biochemistry & Molecular Biology

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Data Services

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Marketing, Communication & Graphic Design Services

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Nucleic Acid Data Analysis

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