Jlmvjszprt2krtbwk4t9 basepair

Basepair

New York, New York, US

Basepair is a web-based, next-gen sequencing (NGS) data analytics company dedicated to accelerating the scientific discovery. We bring together the latest technologies in cloud computing, workflow automation, and interactive visualization to NGS data analysis without requiring costly investments in. Our customers include leading academic institutions and research centers as well as consumer genomics, biotechnology, pharmaceutical, and agri-genomics companies.

RNA-Seq : Starting at $70.00 USD per sample
ChIP-Seq : Starting at $45.00 USD per sample

Basepair has not listed any services.

Ask A Question Find what you're looking for? If not, you can ask this lab a question:
RNA-Seq Data Analysis
Starting at $70.00 per sample

Use our fast and super easy to use software and analyze your RNA-Seq data in 1-2 hours.

You just need the raw fastq files provided by your sequencing core.

The RNA-Seq analysis on Basepair includes:

QC of raw reads to calculate sequencing quality score, contamination, etc.
Alignment to reference genome (STAR or... Show more »

Use our fast and super easy to use software and analyze your RNA-Seq data in 1-2 hours.

You just need the raw fastq files provided by your sequencing core.

The RNA-Seq analysis on Basepair includes:

QC of raw reads to calculate sequencing quality score, contamination, etc.
Alignment to reference genome (STAR or Tophat2)
Post-aligment metrics
Files for visualization in IGV or UCSC genome browser
Digital expression count
Differential gene expression (DESeq2)
List of genes going up and down
Heatmap
Volcano plot

The following reference genomes are supported:
* human (hg38, hg19)
* mouse (mm10, mm9)
* zebrafish (danRer10, zv9)
* Arabidopsis thaliana (TAIR10)
* Saccharomyces cerevisiae (sacCer3)
* Solanum lycopersicum (Solgen 2.40)
* Streptococcus sanguinis SK36\
* Xenopus laevis (X. laevis v9.1)
* Xenopus tropicalis (xenTro7)
* Zebra finch (taeGut2)

We also support ERCC spike-in control analysis.

« Show less
Human
xenopus
Mouse
Tophat
Cufflinks
Saccharomyces cerevisiae
Zebrafish
C. elegans
Illumina
Illumina TruSeq
RNA-Seq
RNA
Private Cloud Servers
DEseq
Star
Illumina
ChIP-Seq Data Analysis
Chromatin immunoprecipitation-sequencing data analysis
Starting at $45.00 per sample

Use our fast and super easy to use software and analyze your ChIP-Seq data in 1-2 hours.

You just need the raw fastq files provided by your sequencing core.

The ChIP-Seq analysis on Basepair includes:

  • QC of raw reads to calculate sequencing quality score, contamination, etc.
  • Trim low quality bases
  • Alignment to... Show more »

Use our fast and super easy to use software and analyze your ChIP-Seq data in 1-2 hours.

You just need the raw fastq files provided by your sequencing core.

The ChIP-Seq analysis on Basepair includes:

  • QC of raw reads to calculate sequencing quality score, contamination, etc.
  • Trim low quality bases
  • Alignment to reference genome (Bowtie2)
  • Remove duplicate reads
  • Files for visualization in IGV or UCSC genome browser
  • Peaks
  • Annotation and genomic distribution of peaks
  • Motif analysis

The following reference genomes are supported:
* human (hg38, hg19)
* mouse (mm10, mm9)
* zebrafish (danRer10, zv9)
* Arabidopsis thaliana (TAIR10)
* Saccharomyces cerevisiae (sacCer3)
* Solanum lycopersicum (Solgen 2.40)
* Streptococcus sanguinis SK36\
* Xenopus laevis (X. laevis v9.1)
* Xenopus tropicalis (xenTro7)
* Zebra finch (taeGut2)

« Show less
Human
xenopus
Mouse
Bowtie
Saccharomyces cerevisiae
Zebrafish
C. elegans
Drosophila
Illumina
Private Cloud Servers
Ion Torrent
ATAC-Seq
Assay for Transposase-Accessible Chromatin with High Throughput Sequencing
Starting at $40.00 per sample

ATAC-Seq Data Analysis

Use our fast and super easy to use software and analyze your ATAC-Seq data in 1-2 hours.

You just need the raw fastq files provided by your sequencing core.
The ATAC-Seq analysis on Basepair includes:

QC of raw reads to calculate sequencing quality score, contamination, etc.
Files for... Show more »

ATAC-Seq Data Analysis

Use our fast and super easy to use software and analyze your ATAC-Seq data in 1-2 hours.

You just need the raw fastq files provided by your sequencing core.
The ATAC-Seq analysis on Basepair includes:

QC of raw reads to calculate sequencing quality score, contamination, etc.
Files for visualization in IGV or UCSC genome browser
ATAC-Seq Alignment (Bowtie 2)
ATAC-Seq Peak Calling (MACS2)
Heatmap
Volcano plot

The following reference genomes are supported:
* human (hg38, hg19)
* mouse (mm10, mm9)
* zebrafish (danRer10, zv9)
* Arabidopsis thaliana (TAIR10)
* Saccharomyces cerevisiae (sacCer3)
* Solanum lycopersicum (Solgen 2.40)
* Streptococcus sanguinis SK36\
* Xenopus laevis (X. laevis v9.1)
* Xenopus tropicalis (xenTro7)
* Zebra finch (taeGut2)

« Show less
Human
xenopus
Mouse
Saccharomyces cerevisiae
Zebrafish
C. elegans
Drosophila
Illumina
Genomics
Private Cloud Servers
Ion Torrent
NGS data analysis
Next generation sequencing data analysis
Price on request

Analyze your NGS data in hours. Upload your raw data, choose among several high quality workflows for RNA-Seq, ChIP-Seq, DNA-Seq, etc. and get results in an hour.

Analyze your NGS data in hours. Upload your raw data, choose among several high quality workflows for RNA-Seq, ChIP-Seq, DNA-Seq, etc. and get results in an hour.

« Show less
Human
Mouse
Tophat
Cufflinks
Bowtie
Saccharomyces cerevisiae
Zebrafish
C. elegans
Drosophila
RNA
DNA
Private Cloud Servers
DEseq
Star
Illumina
DNA Sequencing Data Analysis
Starting at $40.00 per sample

DNA Sequencing Data Analysis

Use our fast and super easy to use software and analyze your DNA-Seq data in 1-2 hours.

You just need the raw fastq files provided by your sequencing core.
The DNA-Seq analysis on Basepair includes:

QC of raw reads to calculate sequencing quality score, contamination, etc.
Files for... Show more »

DNA Sequencing Data Analysis

Use our fast and super easy to use software and analyze your DNA-Seq data in 1-2 hours.

You just need the raw fastq files provided by your sequencing core.
The DNA-Seq analysis on Basepair includes:

QC of raw reads to calculate sequencing quality score, contamination, etc.
Files for visualization in IGV or UCSC genome browser
CRISPR - Ebert Lab
DNA-Seq QC, Alignment
Variant Calling (FreeBayes)
List of genes going up and down
Heatmap
Volcano plot

The following reference genomes are supported:
* human (hg38, hg19)
* mouse (mm10, mm9)
* zebrafish (danRer10, zv9)
* Arabidopsis thaliana (TAIR10)
* Saccharomyces cerevisiae (sacCer3)
* Solanum lycopersicum (Solgen 2.40)
* Streptococcus sanguinis SK36\
* Xenopus laevis (X. laevis v9.1)
* Xenopus tropicalis (xenTro7)
* Zebra finch (taeGut2)

« Show less
Human
Mouse
Saccharomyces cerevisiae
Zebrafish
C. elegans
Drosophila
Illumina
DNA
Genomics
Private Cloud Servers
Ion Torrent
DNA Sequencing
Price on request

DNA Sequencing Services

DNA Sequencing Services

« Show less
Project Management, Consulting, & Support Services
Price on request
Request a quote for more information about this service.
Gene Set Enrichment Analysis
Price on request
Request a quote for more information about this service.
Whole genome assembly
Price on request
Request a quote for more information about this service.
DNA/RNA Analysis and Quality Control
Price on request
Request a quote for more information about this service.
Genomics Consulting
Price on request
Request a quote for more information about this service.
miRNA-Sequencing Data Analysis
Price on request
Request a quote for more information about this service.
Cap analysis gene expression sequencing data analysis
Price on request
Request a quote for more information about this service.
Epigenetic Analysis
Price on request
Request a quote for more information about this service.
Whole Exome Sequencing Data Analysis
Price on request
Request a quote for more information about this service.
Whole Genome Sequencing Data Analysis
Price on request
Request a quote for more information about this service.
Biology
Price on request
Request a quote for more information about this service.
Sequencing Data Analysis
Price on request
Request a quote for more information about this service.
Protein-DNA Interaction Analysis
Price on request
Request a quote for more information about this service.
Nucleic Acid Analysis
Price on request
Request a quote for more information about this service.
Nucleic Acid Data Analysis
Price on request
Request a quote for more information about this service.
Biomolecular Interaction Analysis
Price on request
Request a quote for more information about this service.
DNA
Price on request

DNA Services

DNA Services

« Show less
Biochemistry & Molecular Biology
Price on request
Request a quote for more information about this service.
Nucleic Acid Services
Price on request
Request a quote for more information about this service.
May 8, 2017

Positive review received for RNA-Seq Data Analysis:

"Fast, excellent and reasonably priced...you CAN get all three!! Thank you to the folks at Basepair for helping us deal with some difficult RNA Seq data."

Be the first to endorse Basepair

Endorse this lab